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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtcatacacaggaagcttgattttactctatataatgtgtaatattggaaccttgatttcgcatgtcaattcaatgcgtacagagtctttctggttgcacatcgcaaaaacaatttaagcaagaaacacctcccctccctctcttgcgtaacgtgtggtgcaactgtttggctttgcagTCGGCGTTTGGAACGTGTAGAAAAAACTCTAAAGCCTGTGCCTCTTTTTGGTTCTCTTGCTG

Basic information

species Physcomitrella patens
transcript PP1S9_149V6.1
intron # 6
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|37828881|gb|BJ586893.1|BJ586893
EST:     TTGTGGGCTCTCTATCTTATGCGGAGCCCTTTCTTCGATCTATACACACA                         TCGGCGTTTGGAACGTGTAGAAAAAACTCTAAAGCCTGTGCCTCTTTTTGG
genomic: TTGTGGGCTCTCTATCTTATGCGGAGCCCTTTCTTCGATCTATACACACAgtaagtcata ... ggctttgcagTCGGCGTTTGGAACGTGTAGAAAAAACTCTAAAGCCTGTGCCTCTTTTTGG
EST: gi|18333213|gb|BJ165227.1|BJ165227
EST:     ATCTTATGCGGAGCCCTTTCTTCGATCTATACACACA                         TCGGCGTTTGGAACGTGTAGNNNNNNNCTCTAAAGCCTGTGCCTCTTTTTG
genomic: ATCTTATGCGGAGCCCTTTCTTCGATCTATACACACAgtaagtcata ... ggctttgcagTCGGCGTTTGGAACGTGTAG-AAAAAACTCTAAAGCCTGTGCCTCTTTTTG
EST: gi|162190957|gb|FC368363.1|FC368363
EST:     TTGTGGGCTCTCTATCTTATGCGGAGCCCTTTCTTCGATCTATACACACA                         TCGGCGTTTGGAACGTGTAGAAAAAACTCTAAAGCCTGTGCCTCTTTTTGG
genomic: TTGTGGGCTCTCTATCTTATGCGGAGCCCTTTCTTCGATCTATACACACAgtaagtcata ... ggctttgcagTCGGCGTTTGGAACGTGTAGAAAAAACTCTAAAGCCTGTGCCTCTTTTTGG
EST: gi|162191516|gb|FC368234.1|FC368234
EST:     TTGTGGGCTCTCTATCTTATGCGGAGCCCTTTCTTCGATCTATACACACA                         TCGGCGTTTGGAACGTGTAGAAAAAACTCTAAAGCCTGTGCCTCTTTTTGG
genomic: TTGTGGGCTCTCTATCTTATGCGGAGCCCTTTCTTCGATCTATACACACAgtaagtcata ... ggctttgcagTCGGCGTTTGGAACGTGTAGAAAAAACTCTAAAGCCTGTGCCTCTTTTTGG
EST: gi|162181290|gb|FC358398.1|FC358398
EST:     TTGTGGGCTCTCTATCTTATGCGGAGCCCTTTCTTCGATCTATACACACA                         TCGGCGTTTGGAACGTGTAGAAAAAACTCTAAAGCCTGTGCCTCTTTTTGG
genomic: TTGTGGGCTCTCTATCTTATGCGGAGCCCTTTCTTCGATCTATACACACAgtaagtcata ... ggctttgcagTCGGCGTTTGGAACGTGTAGAAAAAACTCTAAAGCCTGTGCCTCTTTTTGG
EST: gi|37824145|gb|BJ582211.1|BJ582211
EST:     TTGTGGGCTCTCTATCTTATGCGGAGCCCTTTCTTCGATCTATACACACA                         TCGGCGTTTGGAACGTGTAGAAAAAACTCTAAAGCCTGTGCCTCTTTTTGG
genomic: TTGTGGGCTCTCTATCTTATGCGGAGCCCTTTCTTCGATCTATACACACAgtaagtcata ... ggctttgcagTCGGCGTTTGGAACGTGTAGAAAAAACTCTAAAGCCTGTGCCTCTTTTTGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aacacctcccctccctctcttgcgtaacgtgtggtgcaactgtttggctttgcagTCGGCGTTTGGAACGTGTAGAAAAAACTCTAAAGCCTGTGCCTCTTTTTGGTTCTCTTGCTG
                     gcgtaac  putative branch site (score: 3)