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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaccttaagatttctctcatggtgtcttgttgcgtcaaggaattgttctgctgtctttgataaggtgccgatgttcaatatcttgctcttcgcgaccacacactaacatgcatcccttcacagCCGATGTATTCGCAGACACAGCCCCGGTGGTGGTGTCGGTTCTTGACGGCTATAACGTATGCATCTTTGCTTACGGACAGACTGGTACTGGAAAGACATT

Basic information

species Physcomitrella patens
transcript PP1S9_137V6.1
intron # 10
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S9_137V6.1 (Physcomitrella patens), 3'ss of exon 10
lower sequence: GRMZM2G092232_T01 (Zea mays), 3'ss of exon 7
gtaaccttaagatttctctcatggtgtcttgttgc-gtcaaggaattgttctgctgtctttgataaggtgccgatgttcaatatcttgctcttcgcgaccacacactaacatgcatcccttcacagCCGATGTATTCGCAGACACAGCCCCGGTGGTGGTGTCGGTTCTTGACGGCTATAACGTATGCATCTTTGCTTACGGACAGACTGGTACTGGAAAGACATT
                        ||| || || |    ||| ||  || ||    ||| | ||       | |  | |  ||| |  ||  |   | | |      ||| || ||   |  ||||    ||| |  || ||  |  | ||  | ||    || ||  | || ||||| || |||||||||||||||||||||||||| || || |||||||| ||
------------------------tgttttttttctaaaaagcaagagtgcta--atctattatgttcaaacaacttaccttatatgacttctgttgtctaatatgcaacttgaattaatgaacagATATTGTGTATGCCGATGCGTCTCCACTAGTCACATCTGTCTTAGATGGCTACAATGTATGCATCTTTGCTTACGGACAGACGGGAACAGGAAAGACTTT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cgatgttcaatatcttgctcttcgcgaccacacactaacatgcatcccttcacagCCGATGTATTCGCAGACACAGCCCCGGTGGTGGTGTCGGTTCTTGACGGCTATAACGTATGCATCTTTGCTTACGGACAGACTGGTACTGGAAAGACATT
                                cactaac  putative branch site (score: 1)
                                          catcccttc  putative PPT
     ttcaatat  TA-rich tract