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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...caattgaatgctttatgaagaccaccttcatttttacagtctgtataggtagtggattgggggatctgcattttttaacaccagtttggaatgtttgcagGATGGAAAGATAGAAGCTGAAGTGAAGCTTACTGGCATATTGAGCTTGGGTGCCCTGAACCCGGGCGAGAATCGCCGGCATGGCACTGTGATTGCACCTG

Basic information

species Physcomitrella patens
transcript PP1S9_129V6.2
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S9_129V6.2 (Physcomitrella patens), 3'ss of exon 2
lower sequence: LOC_Os04g04950.1 (Oryza sativa), 3'ss of exon 7
-caattgaatgctttatgaagaccaccttcatttttacagtctgtataggtagtggattgggggatctgcattttttaacaccagtttggaatgtttg----cagGATGGAAAGATAGAAGCTGAAGTGAAGCTTACTGGCATATTGAGCTTGGGTGCCCTGAACCCGGGCGAGAATCGCCGGCATGGCACTGTGATTGCACCTG
  | |||  || | | |||    |   ||      |  || ||   ||  | ||| | ||   |  |  | ||| |    | || |||    |   ||    |||||||| ||||||||||| ||||| ||||||||||| ||  | ||  | || || || |  || || ||| |  |     |||| |||   ||||| ||| 
ttatttgggtggtgt-tgat--tctgtttggggggtggaggctccttaaattgtgaagtgattg--cctcttttatgcggatcattttttttttcctggatgcagGATGGTAAGATAGAAGCAGAAGTTAAGCTTACTGGAATTCTTAGTGTAGGAGCTCTAATGCCCGGGGAGCAGAGGAAATATGGTACTACTATTGCCCCTA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

taggtagtggattgggggatctgcattttttaacaccagtttggaatgtttgcagGATGGAAAGATAGAAGCTGAAGTGAAGCTTACTGGCATATTGAGCTTGGGTGCCCTGAACCCGGGCGAGAATCGCCGGCATGGCACTGTGATTGCACCTG
                           ttttaac  putative branch site (score: 2)
                        attttttaaca  TA-rich tract