Skip to another splice site:
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 5'  3'   		2  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATGGTGCAACCTCCCTCTGCATCATTTCGACATGTCCATGCCTGCCTTCGAGCAAATCGCAACTTACAAGGCCGGCATTGTGCCTGTGATGTACCGAAGgtgtgcagttgtgatttgcacgctcattgtcagttttggaatcctcgagaattttccgacaggtcgtgattgttaacttgtgtgatgtttttgaaaatttcag

Basic information

species Physcomitrella patens
transcript PP1S9_119V6.1
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208385909|gb|DC956747.1|DC956747
EST:     GAGCAAATCGCAACTTACAAGGCCGGCATTGTGCCTGTGATGTACCGAAG                         GACTTCTTGTGTAAGGACTGGTGGCATTCACTTCACCATGAGCGGTCACAA
genomic: GAGCAAATCGCAACTTACAAGGCCGGCATTGTGCCTGTGATGTACCGAAGgtgtgcagtt ... aaaatttcagGACTTCTTGTGTAAGGACTGGTGGCATTCACTTCACCATGAGCGGTCACAA
EST: gi|208398571|gb|DC916092.1|DC916092
EST:     GAGCAAATCGCAACTTACAAGGCCCGCATTGTGCCTGTGATGTACCGAAG                         GACTTCTTGTGTAAGGACTGGTGGCATTCACTTCACCATGAGCGGTCACAA
genomic: GAGCAAATCGCAACTTACAAGGCCGGCATTGTGCCTGTGATGTACCGAAGgtgtgcagtt ... aaaatttcagGACTTCTTGTGTAAGGACTGGTGGCATTCACTTCACCATGAGCGGTCACAA
EST: gi|208370503|gb|DC952206.1|DC952206
EST:     GAGCAAATCGCAACNTACAAGGCCGGCATTGTGCCTGTGATGTACCGAAG                         GACTTCTTGTGTAAGGACTGGTGGCATTCACTTCACCATGAGCGGTCACAA
genomic: GAGCAAATCGCAACTTACAAGGCCGGCATTGTGCCTGTGATGTACCGAAGgtgtgcagtt ... aaaatttcagGACTTCTTGTGTAAGGACTGGTGGCATTCACTTCACCATGAGCGGTCACAA
EST: gi|208366580|gb|DC955628.1|DC955628
EST:     GAGCNAATCGCAACTTACAAGGCCGGCATTGTGCCTGTGATGTACCGNAG                         GACTTCTTGTGTNAGGACTGGTGGCATTCACTTCACCATGAGCGGTCACAA
genomic: GAGCAAATCGCAACTTACAAGGCCGGCATTGTGCCTGTGATGTACCGAAGgtgtgcagtt ... aaaatttcagGACTTCTTGTGTAAGGACTGGTGGCATTCACTTCACCATGAGCGGTCACAA
EST: gi|208373726|gb|DC952703.1|DC952703
EST:     GAGCAAATCGCAACTTACAAGGCCGGCATTGTGCCTGTGATGTACCGAAG                         GACTTCTTGTGTAAGGACTGGTGGCATTCACTTCACCATGAGCGGTCACAA
genomic: GAGCAAATCGCAACTTACAAGGCCGGCATTGTGCCTGTGATGTACCGAAGgtgtgcagtt ... aaaatttcagGACTTCTTGTGTAAGGACTGGTGGCATTCACTTCACCATGAGCGGTCACAA
EST: gi|208396785|gb|DC920409.1|DC920409
EST:     GAGCAAATCGCAACTTACAAGGCCGGCATTGTGCCTGTGATGTACCGAAG                         GACTTCTTGTGTANGGACTGGTGGCATTCACTTCACCATGAGCGGTCACAA
genomic: GAGCAAATCGCAACTTACAAGGCCGGCATTGTGCCTGTGATGTACCGAAGgtgtgcagtt ... aaaatttcagGACTTCTTGTGTAAGGACTGGTGGCATTCACTTCACCATGAGCGGTCACAA
EST: gi|208356203|gb|DC946251.1|DC946251
EST:     GAGCAAATCGCAACTTACAAGGCCGGCATTGTGCCTGTGATGTACCGAAG                         GACTTCTTGTGTAAGGACTGGTGGCATTCACTTCACCATGAGCGGTCACAA
genomic: GAGCAAATCGCAACTTACAAGGCCGGCATTGTGCCTGTGATGTACCGAAGgtgtgcagtt ... aaaatttcagGACTTCTTGTGTAAGGACTGGTGGCATTCACTTCACCATGAGCGGTCACAA
EST: gi|208395795|gb|DC920301.1|DC920301
EST:     GAGCAAATCGCAACTTACAAGGCCGGCATTGTGCCTGTGATGTACCGAAG                         GACTTCTTGTGTAAGGACTGGTGGCATTCACTTCACCATGAGCGGTCACAA
genomic: GAGCAAATCGCAACTTACAAGGCCGGCATTGTGCCTGTGATGTACCGAAGgtgtgcagtt ... aaaatttcagGACTTCTTGTGTAAGGACTGGTGGCATTCACTTCACCATGAGCGGTCACAA
EST: gi|208352533|gb|DC918242.1|DC918242
EST:     GAGCAATTCGCAACTTACAAGGCCGGCATTGTGCCTGTGATGTACCGAAG                         GACTTCTTGTGTAAGGACTGGTGGCATTCACTTCACCATGAGCGGTCACAA
genomic: GAGCAAATCGCAACTTACAAGGCCGGCATTGTGCCTGTGATGTACCGAAGgtgtgcagtt ... aaaatttcagGACTTCTTGTGTAAGGACTGGTGGCATTCACTTCACCATGAGCGGTCACAA
EST: gi|208349736|gb|DC917914.1|DC917914
EST:     GAGCAAATCGCAACTTACAAGGCCGGCATTGTGCCTGTGATGTACCGAAG                         GACTTCTTGTGTAAGGACTGGTGGCATTCACTTCACCATGAGCGGTCACAA
genomic: GAGCAAATCGCAACTTACAAGGCCGGCATTGTGCCTGTGATGTACCGAAGgtgtgcagtt ... aaaatttcagGACTTCTTGTGTAAGGACTGGTGGCATTCACTTCACCATGAGCGGTCACAA
EST: gi|208375068|gb|DC956436.1|DC956436
EST:     GAGCAAATCGCAACTTACAAGGCCGGCATTGTGCCTGTGATGTACCGAAG                         GACTTCTTGTGTAAGGACTGGTGGCATTCACTTCACCATGAGCGGTCACAA
genomic: GAGCAAATCGCAACTTACAAGGCCGGCATTGTGCCTGTGATGTACCGAAGgtgtgcagtt ... aaaatttcagGACTTCTTGTGTAAGGACTGGTGGCATTCACTTCACCATGAGCGGTCACAA