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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACGATGCTCGAGGCTCGATGTGAAACTTTCTGACAGAACGATTTAGGAGCCTAATGAATTAGTCGACTCTATTCGGTTTCAGCTTCCTGAAGATTTTGAGgtaggttccttggaaacacaattcgttggctgtttctgtctgaaaatttggatctcgtgtgatccgctggtctgagttggtcatcaaccttcgttttaat...

Basic information

species Physcomitrella patens
transcript PP1S9_115V6.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|100371700|gb|BY948765.1|BY948765
EST:     CTAATGAATTAGTCGACTCTATTCGGTTTCAGCTTCCTGAAGATTTTGAG                         GACAACGATTTGAGGAACTTCAACCCCAAAAGATTTTCATTATCCCCAAAG
genomic: CTAATGAATTAGTCGACTCTATTCGGTTTCAGCTTCCTGAAGATTTTGAGgtaggttcct ... gatattgcagGACAACGATTTGAGGAACTTCAACCCCAAAAGATTTTCATTATCCCCAAAG
EST: gi|100422042|gb|BY957833.1|BY957833
EST:     CTAATGAATTAGTCGACTCTATTCGGTTTCAGCTTCCTGAAGATTTTGAG                         GACAACGATTTGAGGAACTTCAACCCCAAAAGATTTTCATTATCCCCAAAG
genomic: CTAATGAATTAGTCGACTCTATTCGGTTTCAGCTTCCTGAAGATTTTGAGgtaggttcct ... gatattgcagGACAACGATTTGAGGAACTTCAACCCCAAAAGATTTTCATTATCCCCAAAG
EST: gi|100377145|gb|BY968385.1|BY968385
EST:     CTAATGAATTAGTCGACTCTATTCGGTTTCAGCTTCCTGAAGATTTTGAG                         GACAACGATTTGAGGAACTTCAACCCCAAAAGATTTTCATTATCCCCAAAG
genomic: CTAATGAATTAGTCGACTCTATTCGGTTTCAGCTTCCTGAAGATTTTGAGgtaggttcct ... gatattgcagGACAACGATTTGAGGAACTTCAACCCCAAAAGATTTTCATTATCCCCAAAG
EST: gi|100409227|gb|BY991909.1|BY991909
EST:     CTAATGAATTAGTCGACTCTATTCGGTTTCAGCTTCCTGAAGATTTTGAG                         GACAACGATTTGAGGAACTTCAACCCCAAAAGATTTTCATTATCCCCAAAG
genomic: CTAATGAATTAGTCGACTCTATTCGGTTTCAGCTTCCTGAAGATTTTGAGgtaggttcct ... gatattgcagGACAACGATTTGAGGAACTTCAACCCCAAAAGATTTTCATTATCCCCAAAG
EST: gi|100396958|gb|BY953913.1|BY953913
EST:     CTAATGAATTAGTCGACTCTATTCGGTTTCAGCTTCCTGAAGATTTTGAG                         GACAACGATTTGAGGAACTTCAACCCCAAAAGATTTTCATTATCCCCAAAG
genomic: CTAATGAATTAGTCGACTCTATTCGGTTTCAGCTTCCTGAAGATTTTGAGgtaggttcct ... gatattgcagGACAACGATTTGAGGAACTTCAACCCCAAAAGATTTTCATTATCCCCAAAG
EST: gi|100385609|gb|BY987674.1|BY987674
EST:     CTAATGAATTAGTCGACTCTATTCGGTTTCAGCTTCCTGAAGATTTTGAG                         GACAACGATTTGAGGAACTTCAACCCCAAAAGATTTTCATTATCCCCAAAG
genomic: CTAATGAATTAGTCGACTCTATTCGGTTTCAGCTTCCTGAAGATTTTGAGgtaggttcct ... gatattgcagGACAACGATTTGAGGAACTTCAACCCCAAAAGATTTTCATTATCCCCAAAG
EST: gi|100430290|gb|BY959795.1|BY959795
EST:     CTAATGAATTAGTCGACTCTATTCGGTTTCAGCTTCCTGAAGATTTTGAG                         GACAACGATTTGAGGAACTTCAACCCCAAAAGATTTTCATTATCCCCAAAG
genomic: CTAATGAATTAGTCGACTCTATTCGGTTTCAGCTTCCTGAAGATTTTGAGgtaggttcct ... gatattgcagGACAACGATTTGAGGAACTTCAACCCCAAAAGATTTTCATTATCCCCAAAG
EST: gi|100414695|gb|BY956818.1|BY956818
EST:     CTAATGAATTAGTCGACTCTATTCGGTTTCAGCTTCCTGAAGATTTTGAG                         GACAACGATTTGAGGAACTTCAACCCCAAAAGATTTTCATTATCCCCAAAG
genomic: CTAATGAATTAGTCGACTCTATTCGGTTTCAGCTTCCTGAAGATTTTGAGgtaggttcct ... gatattgcagGACAACGATTTGAGGAACTTCAACCCCAAAAGATTTTCATTATCCCCAAAG
EST: gi|100444257|gb|BY982286.1|BY982286
EST:     CTAATGAATTAGTCGACTCTATTCGGTTTCAGCTTCCTGAAGATTTTGAG                         GACAACGATTTGAGGAACTTCAACCCCAAAAGATTTTCATTATCCCCAAAG
genomic: CTAATGAATTAGTCGACTCTATTCGGTTTCAGCTTCCTGAAGATTTTGAGgtaggttcct ... gatattgcagGACAACGATTTGAGGAACTTCAACCCCAAAAGATTTTCATTATCCCCAAAG
EST: gi|100416377|gb|BY975359.1|BY975359
EST:     CTAATGAATTAGTCGACTCTATTCGGTTTCAGCTTCCTGAAGATTTTGAG                         GACAACGATTTGAGGAACTTCAACCCCAAAAGATTTTCATTATCCCCAAAG
genomic: CTAATGAATTAGTCGACTCTATTCGGTTTCAGCTTCCTGAAGATTTTGAGgtaggttcct ... gatattgcagGACAACGATTTGAGGAACTTCAACCCCAAAAGATTTTCATTATCCCCAAAG
EST: gi|100356293|gb|BY946292.1|BY946292
EST:     CTAATGAATTAGTCGACTCTATTCGGTTTCAGCTTCCTGAAGATTTTGAG                         GACAACGATTTGAGGAACTTCAACCCCAAAAGATTTTCATTATCCCCAAAG
genomic: CTAATGAATTAGTCGACTCTATTCGGTTTCAGCTTCCTGAAGATTTTGAGgtaggttcct ... gatattgcagGACAACGATTTGAGGAACTTCAACCCCAAAAGATTTTCATTATCCCCAAAG
EST: gi|18350641|gb|BJ182692.1|BJ182692
EST:     CTAATGAATTAGTCGACTCTATTCGGTTTCAGCTTCCTGAAGATTTTGAG                         GACAACGATTTGAGGAACTTCAACCCCAAAAGATTTTCATTATCCCCAAAG
genomic: CTAATGAATTAGTCGACTCTATTCGGTTTCAGCTTCCTGAAGATTTTGAGgtaggttcct ... gatattgcagGACAACGATTTGAGGAACTTCAACCCCAAAAGATTTTCATTATCCCCAAAG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ACGATGCTCGAGGCTCGATGTGAAACTTTCTGACAGAACGATTTAGGAGCCTAATGAATTAGTCGACTCTATTCGGTTTCAGCTTCCTGAAGATTTTGAGgtaggttccttggaaacacaattcgttggctgtttctgtctgaaaatttggatctcgtgtgatccgctggtctgagttggtcatcaaccttcgttttaat

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaacacaa