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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCACGGGAGGGCCTCATTCAGCCCAACTTCGGACAGTCACACAATCAGCAATTTCAGTGCGCTTCATGCCAGATTCTTCGCCGTATTATCCACTCAAACGgtacttcctgactccttttctgaagtaagaacagatagatgccgttgaaacagctctttttgtggcacaatgtaaaatgctgcttcacaactgaattagt...

Basic information

species Physcomitrella patens
transcript PP1S9_112V6.2
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|37836724|gb|BJ594732.1|BJ594732
EST:     ATTTCAGTGCGCTTCATGCCAGATTCTTCGCCGTATTATCCACTCAAACG                         GAGTTCAAGACACAAAGCTTGAGATTCATGGATGTGATGGCCAAAGCTATC
genomic: ATTTCAGTGCGCTTCATGCCAGATTCTTCGCCGTATTATCCACTCAAACGgtacttcctg ... tgtgggtcagGAGTTCAAGACACAAAGCTTGAGATTCATGGATGTGATGGCCAAAGCTATC
EST: gi|37827650|gb|BJ585662.1|BJ585662
EST:     ATTTCAGTGCGCTTCATGCCAGATTCTTCGCCGTATTATCCACTCAAACG                         GAGTTCAAGACACAAAGCTTGAGATTCATGGATGTGATGGCCAAAGCTATC
genomic: ATTTCAGTGCGCTTCATGCCAGATTCTTCGCCGTATTATCCACTCAAACGgtacttcctg ... tgtgggtcagGAGTTCAAGACACAAAGCTTGAGATTCATGGATGTGATGGCCAAAGCTATC