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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGCCTCCCGCCTTCTGGCTCGCCTCGCTGCTCGCTCAAGCCCTGCCCCGTTGCCTTGTCTCCACCAGCAGTCGCGATCTCTCAACATCCATGAGTATCAGgtgcgtgtatttgctctttgctctgttttgccgtgcgcgatacctcctgcccctgtactgagcctctctcactctgcttttttttcag

Basic information

species Physcomitrella patens
transcript PP1S9_103V6.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208373828|gb|DC936599.1|DC936599
EST:     TGCCTTGTCTCCACCAGCAGTCGCGATCTCTCAACATCCATGAGTATCAG                         GGCGCTGCATTGATGAGCAAATTCGGAGTGAATGTGCCCAAGGGTGCCGTT
genomic: TGCCTTGTCTCCACCAGCAGTCGCGATCTCTCAACATCCATGAGTATCAGgtgcgtgtat ... tttttttcagGGCGCTGCATTGATGAGCAAATTCGGAGTGAATGTGCCCAAGGGTGCCGTT
EST: gi|100436155|gb|BY979407.1|BY979407
EST:     TGCCTTGTCTCCACCAGCAGTCGCGATCTCTCAACATCCATGAGTATCAG                         GGCGCTGCATTGATGAGCAAATTCGGAGTGAATGTGCCCAAGGGTGCCGTT
genomic: TGCCTTGTCTCCACCAGCAGTCGCGATCTCTCAACATCCATGAGTATCAGgtgcgtgtat ... tttttttcagGGCGCTGCATTGATGAGCAAATTCGGAGTGAATGTGCCCAAGGGTGCCGTT
EST: gi|100387442|gb|BY988313.1|BY988313
EST:     TGCCTTGTCTCCACCAGCAGTCGCGATCTCTCAACATCCATGAGTATCAG                         GGCGCTGCATTGATGAGCAAATTCGGAGTGAATGTGCCCAAGGGTGCCGTT
genomic: TGCCTTGTCTCCACCAGCAGTCGCGATCTCTCAACATCCATGAGTATCAGgtgcgtgtat ... tttttttcagGGCGCTGCATTGATGAGCAAATTCGGAGTGAATGTGCCCAAGGGTGCCGTT
EST: gi|100379638|gb|BY949869.1|BY949869
EST:     TGCCTTGTCTCCACCAGCAGTCGCGATCTCTCAACATCCATGAGTATCAG                         GGCGCTGCATTGATGAGCAAATTCGGAGTGAATGTGCCCAAGGGTGCCGTT
genomic: TGCCTTGTCTCCACCAGCAGTCGCGATCTCTCAACATCCATGAGTATCAGgtgcgtgtat ... tttttttcagGGCGCTGCATTGATGAGCAAATTCGGAGTGAATGTGCCCAAGGGTGCCGTT
EST: gi|67701623|gb|BJ961856.1|BJ961856
EST:     TGCCTTGTCTCCACCAGCAGTCGCGATCTCTCAACATCCATGAGTATCAN                         GGCGCTGCATTGATGAGCAAATTCGGAGTGAATGTGCCCAAGGGTGCCGTT
genomic: TGCCTTGTCTCCACCAGCAGTCGCGATCTCTCAACATCCATGAGTATCAGgtgcgtgtat ... tttttttcagGGCGCTGCATTGATGAGCAAATTCGGAGTGAATGTGCCCAAGGGTGCCGTT
EST: gi|100395304|gb|BY953670.1|BY953670
EST:     TGCCTTGTCTCCACCAGCAGTCGCGATCTCTCAACATCCATGAGTATCAG                         GGCGCTGCATTGATGAGCAAATTCGGAGTGAATGTGCCCAAGGGTGCCGTT
genomic: TGCCTTGTCTCCACCAGCAGTCGCGATCTCTCAACATCCATGAGTATCAGgtgcgtgtat ... tttttttcagGGCGCTGCATTGATGAGCAAATTCGGAGTGAATGTGCCCAAGGGTGCCGTT
EST: gi|67712940|gb|BJ966389.1|BJ966389
EST:     TGCCTTGTCTCCACCAGCAGTCGCGATCTCTCAACATCCATGAGTATCAG                         GGCGCTGCATTGATGAGCAAATTCGGAGTGAATGTGCCCAAGGGTGCCGTT
genomic: TGCCTTGTCTCCACCAGCAGTCGCGATCTCTCAACATCCATGAGTATCAGgtgcgtgtat ... tttttttcagGGCGCTGCATTGATGAGCAAATTCGGAGTGAATGTGCCCAAGGGTGCCGTT
EST: gi|100438224|gb|BY961716.1|BY961716
EST:     TGCCTTGTCTCCACCAGCAGTCGCGATCTCTCAACATCCATGAGTATCAG                         GGCGCTGCATTGATGAGCAAATTCGGAGTGAATGTGCCCAAGGGTGCCGTT
genomic: TGCCTTGTCTCCACCAGCAGTCGCGATCTCTCAACATCCATGAGTATCAGgtgcgtgtat ... tttttttcagGGCGCTGCATTGATGAGCAAATTCGGAGTGAATGTGCCCAAGGGTGCCGTT
EST: gi|208369720|gb|DC932618.1|DC932618
EST:     TGCCTTGTCTCCACCAGCAGTCGCGATCTCTCAACATCCATGAGTATCAG                         GGCGCTGCATTGATGAGCAAATTCGGAGTGAATGTGCCCAAGGGTGCCGTT
genomic: TGCCTTGTCTCCACCAGCAGTCGCGATCTCTCAACATCCATGAGTATCAGgtgcgtgtat ... tttttttcagGGCGCTGCATTGATGAGCAAATTCGGAGTGAATGTGCCCAAGGGTGCCGTT
EST: gi|208390018|gb|DC938073.1|DC938073
EST:     TGCCTTGTCTCCACCAGCAGTCGCGATCTCTCAACATCCATGAGTATCAG                         GGCGCTGCATTGATGAGCAAATTCGGAGTGAATGTGCCCAAGGGTGCCGTT
genomic: TGCCTTGTCTCCACCAGCAGTCGCGATCTCTCAACATCCATGAGTATCAGgtgcgtgtat ... tttttttcagGGCGCTGCATTGATGAGCAAATTCGGAGTGAATGTGCCCAAGGGTGCCGTT
EST: gi|18326965|gb|BJ158966.1|BJ158966
EST:     TGCCTTGTCTCCACCAGCAGTCGCGATCTCTCAACATCCATGAGTATCAG                         GGCGCTGCATTGATGAGCAAATTCGGAGTGAATGTGCCCAAGGGTGCCGTT
genomic: TGCCTTGTCTCCACCAGCAGTCGCGATCTCTCAACATCCATGAGTATCAGgtgcgtgtat ... tttttttcagGGCGCTGCATTGATGAGCAAATTCGGAGTGAATGTGCCCAAGGGTGCCGTT
EST: gi|208376441|gb|DC932309.1|DC932309
EST:     TGCCTTGTCTCCACCAGCAGTCGCGATCTCTCAACATCCATGAGTATCAG                         GGCGCTGCATTGATGAGCAAATTCGGAGTGAATGTGCCCAAGGGTGCCGTT
genomic: TGCCTTGTCTCCACCAGCAGTCGCGATCTCTCAACATCCATGAGTATCAGgtgcgtgtat ... tttttttcagGGCGCTGCATTGATGAGCAAATTCGGAGTGAATGTGCCCAAGGGTGCCGTT
EST: gi|208354269|gb|DC902483.1|DC902483
EST:     TGCCTTGTCTCCACCAGCAGTCGCGATCTCTCAACATCCATGAGTATCAG                         GGCGCTGCATTGATGAGCAAATTCGGAGTGAATGTGCCCAAGGGTGCCGTT
genomic: TGCCTTGTCTCCACCAGCAGTCGCGATCTCTCAACATCCATGAGTATCAGgtgcgtgtat ... tttttttcagGGCGCTGCATTGATGAGCAAATTCGGAGTGAATGTGCCCAAGGGTGCCGTT
EST: gi|208386847|gb|DC941565.1|DC941565
EST:     TGCCTTGTCTCCACCAGCAGTCGCGATCTCTCAACATCCATGAGTATCAG                         GGCGCTGCATTGATGAGCAAATTCGGAGTGAATGTGCCCAAGGGTGCCGTT
genomic: TGCCTTGTCTCCACCAGCAGTCGCGATCTCTCAACATCCATGAGTATCAGgtgcgtgtat ... tttttttcagGGCGCTGCATTGATGAGCAAATTCGGAGTGAATGTGCCCAAGGGTGCCGTT
EST: gi|67704015|gb|BJ964248.1|BJ964248
EST:     TGCCTTGTCTCCACCAGCAGTCGCGATCTCTCAACATCCATGAGTATCAG                         GGCGCTGCATTGATGAGCAAATTCGGAGTGAATGTGCCCAAGGGTGCCGTT
genomic: TGCCTTGTCTCCACCAGCAGTCGCGATCTCTCAACATCCATGAGTATCAGgtgcgtgtat ... tttttttcagGGCGCTGCATTGATGAGCAAATTCGGAGTGAATGTGCCCAAGGGTGCCGTT
EST: gi|100365282|gb|BY966901.1|BY966901
EST:     TGCCTTGTCTCCACCAGCAGTCGCGATCTCTCAACATCCATGAGTATCAG                         GGCGCTGCATTGATGAGCAAATTCGGAGTGAATGTGCCCAAGGGTGCCGTT
genomic: TGCCTTGTCTCCACCAGCAGTCGCGATCTCTCAACATCCATGAGTATCAGgtgcgtgtat ... tttttttcagGGCGCTGCATTGATGAGCAAATTCGGAGTGAATGTGCCCAAGGGTGCCGTT
EST: gi|67571747|gb|BJ944571.1|BJ944571
EST:     TGCCTTGTCTCCACCAGCAGTCGCGATCTCTCAACATCCATGAGTATCAG                         GGCGCTGCATTGATGAGCAAATTCGGAGTGAATGTGCCCAAGGGTGCCGTT
genomic: TGCCTTGTCTCCACCAGCAGTCGCGATCTCTCAACATCCATGAGTATCAGgtgcgtgtat ... tttttttcagGGCGCTGCATTGATGAGCAAATTCGGAGTGAATGTGCCCAAGGGTGCCGTT
EST: gi|100450378|gb|CJ974233.1|CJ974233
EST:     TGCCTTGTCTCCACCAGCAGTCGCGATCTCTCAACATCCATGAGTATCAG                         GGCGCTGCATTGATGAGCAAATTCGGAGTGAATGTGCCCAAGGGTGCCGTT
genomic: TGCCTTGTCTCCACCAGCAGTCGCGATCTCTCAACATCCATGAGTATCAGgtgcgtgtat ... tttttttcagGGCGCTGCATTGATGAGCAAATTCGGAGTGAATGTGCCCAAGGGTGCCGTT
EST: gi|100379592|gb|BY949846.1|BY949846
EST:     TGCCTTGTCTCCACCAGCAGTCGCGATCTCTCAACATCCATGAGTATCAG                         GGCGCTGCATTGATGAGCAAATTCGGAGTGAATGTGCCCAAGGGTGCCGTT
genomic: TGCCTTGTCTCCACCAGCAGTCGCGATCTCTCAACATCCATGAGTATCAGgtgcgtgtat ... tttttttcagGGCGCTGCATTGATGAGCAAATTCGGAGTGAATGTGCCCAAGGGTGCCGTT
EST: gi|67704790|gb|BJ965023.1|BJ965023
EST:     TGCCTTGTCTCCACCAGCAGTCGCGATCTCTCAACATCCATGAGTATCAG                         GGCGCTGCATTGATGAGCAAATTCGGAGTGAATGTGCCCAAGGGTGCCGTT
genomic: TGCCTTGTCTCCACCAGCAGTCGCGATCTCTCAACATCCATGAGTATCAGgtgcgtgtat ... tttttttcagGGCGCTGCATTGATGAGCAAATTCGGAGTGAATGTGCCCAAGGGTGCCGTT
EST: gi|67719429|gb|BJ969688.1|BJ969688
EST:     TGCCTTGTCTCCACCAGCAGTCGCGATCTCTCAACATCCATGAGTATCAG                         GGCGCTGCATTGATGAGCAAATTCGGAGTGAATGTGCCCAAGGGTGCCGTT
genomic: TGCCTTGTCTCCACCAGCAGTCGCGATCTCTCAACATCCATGAGTATCAGgtgcgtgtat ... tttttttcagGGCGCTGCATTGATGAGCAAATTCGGAGTGAATGTGCCCAAGGGTGCCGTT
EST: gi|208364000|gb|DC939593.1|DC939593
EST:     TGCCTTGTCTCCACCAGCAGTCGCGATCTCTCAACATCCATGAGTATCAG                         GGCGCTGCATTGATGAGCAAATTCGGAGTGAATGTGCCCAAGGGTGCCGTT
genomic: TGCCTTGTCTCCACCAGCAGTCGCGATCTCTCAACATCCATGAGTATCAGgtgcgtgtat ... tttttttcagGGCGCTGCATTGATGAGCAAATTCGGAGTGAATGTGCCCAAGGGTGCCGTT
EST: gi|208393623|gb|DC904339.1|DC904339
EST:     TGCCTTGTCTCCACCAGCAGTCGCGATCTCTCAACATCCATGAGTATCAG                         GGCGCTGCATTGATGAGCAAATTCGGAGTGAATGTGCCCAAGGGTGCCGTT
genomic: TGCCTTGTCTCCACCAGCAGTCGCGATCTCTCAACATCCATGAGTATCAGgtgcgtgtat ... tttttttcagGGCGCTGCATTGATGAGCAAATTCGGAGTGAATGTGCCCAAGGGTGCCGTT
EST: gi|100376654|gb|BY949400.1|BY949400
EST:     TGCCTTGTCTCCACCAGCAGTCGCGATCTCTCAACATCCATGAGTATCAG                         GGCGCTGCATTGATGAGCAAATTCGGAGTGAATGTGCCCAAGGGTGCCGTT
genomic: TGCCTTGTCTCCACCAGCAGTCGCGATCTCTCAACATCCATGAGTATCAGgtgcgtgtat ... tttttttcagGGCGCTGCATTGATGAGCAAATTCGGAGTGAATGTGCCCAAGGGTGCCGTT
EST: gi|100385264|gb|BY950856.1|BY950856
EST:     TGCCTTGTCTCCACCAGCAGTCGCGATCTCTCAACATCCATGAGTATCAG                         GGCGCTGCATTGATGAGCAAATTCGGAGTGAATGTGCCCAAGGGTGCCGTT
genomic: TGCCTTGTCTCCACCAGCAGTCGCGATCTCTCAACATCCATGAGTATCAGgtgcgtgtat ... tttttttcagGGCGCTGCATTGATGAGCAAATTCGGAGTGAATGTGCCCAAGGGTGCCGTT
EST: gi|100394556|gb|BY989846.1|BY989846
EST:     TGCCTTGTCTCCACCAGCAGTCGCGATCTCTCAACATCCATGAGTATCAG                         GGCGCTGCATTGATGAGCAAATTCGGAGTGAATGTGCCCAAGGGTGCCGTT
genomic: TGCCTTGTCTCCACCAGCAGTCGCGATCTCTCAACATCCATGAGTATCAGgtgcgtgtat ... tttttttcagGGCGCTGCATTGATGAGCAAATTCGGAGTGAATGTGCCCAAGGGTGCCGTT
EST: gi|100444730|gb|BY982559.1|BY982559
EST:     TGCCTTGTCTCCACCAGCAGTCGCGATCTCTCAACATCCATGAGTATCAG                         GGCGCTGCATTGATGAGCAAATTCGGAGTGAATGTGCCCAAGGGTGCCGTT
genomic: TGCCTTGTCTCCACCAGCAGTCGCGATCTCTCAACATCCATGAGTATCAGgtgcgtgtat ... tttttttcagGGCGCTGCATTGATGAGCAAATTCGGAGTGAATGTGCCCAAGGGTGCCGTT
EST: gi|18350484|gb|BJ182535.1|BJ182535
EST:     TGCCTTGTCTCCACCAGCAGTCGCGATCTCTCAACATCCATGAGTATCAG                         GGCGCTGCATTGATGAGCAAATTCGGAGTGAATGTGCCCAAGGGTGCCGTT
genomic: TGCCTTGTCTCCACCAGCAGTCGCGATCTCTCAACATCCATGAGTATCAGgtgcgtgtat ... tttttttcagGGCGCTGCATTGATGAGCAAATTCGGAGTGAATGTGCCCAAGGGTGCCGTT
EST: gi|100369353|gb|BY948059.1|BY948059
EST:     TGCCTTGTCTCCACCAGCAGTCGCGATCTCTCAACATCCATGAGTATCAG                         GGCGCTGCATTGATGAGCAAATTCGGAGTGAATGTGCCCAAGGGTGCCGTT
genomic: TGCCTTGTCTCCACCAGCAGTCGCGATCTCTCAACATCCATGAGTATCAGgtgcgtgtat ... tttttttcagGGCGCTGCATTGATGAGCAAATTCGGAGTGAATGTGCCCAAGGGTGCCGTT
EST: gi|18362729|gb|BJ194800.1|BJ194800
EST:     TGCCTTGTCTCCACCAGCAGTCGCGATCTCTCAACATCCATGAGTATCAG                         GGCGCTGCATTGATGAGCAAATTCGGAGTGAATGTGCCCAAGGGTGCCGTT
genomic: TGCCTTGTCTCCACCAGCAGTCGCGATCTCTCAACATCCATGAGTATCAGgtgcgtgtat ... tttttttcagGGCGCTGCATTGATGAGCAAATTCGGAGTGAATGTGCCCAAGGGTGCCGTT
EST: gi|162189404|gb|FC366562.1|FC366562
EST:     TGCCTTGTCTCCACCAGCAGTCGCGATCTCTCAACATCCATGAGTATCAG                         GGCGCTGCATTGATGAGCAAATTCGGGGTGAATGTGCCCAAGGGTGCCGTT
genomic: TGCCTTGTCTCCACCAGCAGTCGCGATCTCTCAACATCCATGAGTATCAGgtgcgtgtat ... tttttttcagGGCGCTGCATTGATGAGCAAATTCGGAGTGAATGTGCCCAAGGGTGCCGTT
EST: gi|100356151|gb|BY946222.1|BY946222
EST:     TGCCTTGTCTCCACCAGCAGTCGCGATCTCTCAACATCCATGAGTATCAG                         GGCGCTGCATTGATGAGCAAATTCGGAGTGAATGTGCCCAAGGGTGCCGTT
genomic: TGCCTTGTCTCCACCAGCAGTCGCGATCTCTCAACATCCATGAGTATCAGgtgcgtgtat ... tttttttcagGGCGCTGCATTGATGAGCAAATTCGGAGTGAATGTGCCCAAGGGTGCCGTT
EST: gi|67508667|gb|BJ941528.1|BJ941528
EST:     TGCCTTGTCTCCACCAGCAGTCGCGATCTCTCAACATCCATGAGTATCAG                         GGCGCTGCATTGATGAGCAAATTCGGAGTGAATGTGCCCAAGGGTGCCGTT
genomic: TGCCTTGTCTCCACCAGCAGTCGCGATCTCTCAACATCCATGAGTATCAGgtgcgtgtat ... tttttttcagGGCGCTGCATTGATGAGCAAATTCGGAGTGAATGTGCCCAAGGGTGCCGTT
EST: gi|100363621|gb|BY966478.1|BY966478
EST:     TGCCTTGTCTACACCAGCAGTCGCGATCTCTCAATATCCATGAGTATCAA                         GGCGCTGCATTGATGAGCAAATTCGGAGTGAATGTGCCCAAGGGTGCCGAT
genomic: TGCCTTGTCTCCACCAGCAGTCGCGATCTCTCAACATCCATGAGTATCAGgtgcgtgtat ... tttttttcagGGCGCTGCATTGATGAGCAAATTCGGAGTGAATGTGCCCAAGGGTGCCGTT