Skip to another splice site:
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 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ttagatatacgtgtttctcgtggctgcactccgtcagcgtcgatcggagcgcttgcctcgtgttagctttgtatattgactttttcgttcatcgttgcagATGCGAAGACAATGCCCGGAGTGACTGCTCCGTTCGAGAACATCTTCGACCCTGCTGACCTCCTGGCCCGCGCTGCCTCCAGCCCCCGACCCATTAAGGA

Basic information

species Physcomitrella patens
transcript PP1S99_95V6.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208383439|gb|DC911191.1|DC911191
EST:     TGACAAGGTCTCTCCTGATCCAGCCGTCGTGCCCCCAAATGTGCTCGAGT                         ATGCGAAGACAATGCCCGGAGTGACTGCTCCGTTCGAGAACATCTTCGACC
genomic: TGACAAGGTCTCTCCTGATCCAGCCGTCGTGCCCCCAAATGTGCTCGAGTgtaagacctc ... atcgttgcagATGCGAAGACAATGCCCGGAGTGACTGCTCCGTTCGAGAACATCTTCGACC
EST: gi|162252391|gb|FC427811.1|FC427811
EST:     TGACAAGGTCTCTCCTGATCCAGCCGTCGTGCCCCCAAATGTGCTCGAGT                         ATGCGAAGACAATGGCCGGAGTGACTGCTCCGTTCGAGAACATTTTCGACC
genomic: TGACAAGGTCTCTCCTGATCCAGCCGTCGTGCCCCCAAATGTGCTCGAGTgtaagacctc ... atcgttgcagATGCGAAGACAATGCCCGGAGTGACTGCTCCGTTCGAGAACATCTTCGACC
EST: gi|208344684|gb|DC905133.1|DC905133
EST:     TGACAAGGTCTCTCCTGATCCAGCCGTCGTGCCCCCAAATGTGCTCGAGT                         ATGCGAAGACAATGCCCGGAGTGACTGCTCCGTTCGAGAACATCTTCGACC
genomic: TGACAAGGTCTCTCCTGATCCAGCCGTCGTGCCCCCAAATGTGCTCGAGTgtaagacctc ... atcgttgcagATGCGAAGACAATGCCCGGAGTGACTGCTCCGTTCGAGAACATCTTCGACC
EST: gi|162214251|gb|FC389762.1|FC389762
EST:     TGACAAGGTCTCTCCTGATCCAGCCGTCGTGCCCCCAAATGTGCTCGAGT                         ATGCGAAGACAATGGCCGGAGTGACTGCTCCGTTCGAGAACATTTTCGACC
genomic: TGACAAGGTCTCTCCTGATCCAGCCGTCGTGCCCCCAAATGTGCTCGAGTgtaagacctc ... atcgttgcagATGCGAAGACAATGCCCGGAGTGACTGCTCCGTTCGAGAACATCTTCGACC
EST: gi|18331387|gb|BJ163398.1|BJ163398
EST:     TGACAAGGTCTCTCCTGATCCAGCCGTCGTGCCCCCAAATGTGCTCGAGT                         ATGCGAAGACAATGCCCGGAGTGACTGCTCCGTTCGAGAACATCTTCGACC
genomic: TGACAAGGTCTCTCCTGATCCAGCCGTCGTGCCCCCAAATGTGCTCGAGTgtaagacctc ... atcgttgcagATGCGAAGACAATGCCCGGAGTGACTGCTCCGTTCGAGAACATCTTCGACC
EST: gi|67572697|gb|BJ945521.1|BJ945521
EST:     TGACAAGGTCTCTCCTGATCCAGCCGTCGTGCCCCCAAATGTGCTCGAGT                         ATGCGAAGACAATGCCCGGAGTGACTGCTCCGTTCGAGAACATCTTCGACC
genomic: TGACAAGGTCTCTCCTGATCCAGCCGTCGTGCCCCCAAATGTGCTCGAGTgtaagacctc ... atcgttgcagATGCGAAGACAATGCCCGGAGTGACTGCTCCGTTCGAGAACATCTTCGACC
EST: gi|208368614|gb|DC939965.1|DC939965
EST:     TGACAAGGTCTCTCCTGATCCAGCCGTCGTGCCCCCAAATGTGCTCGAGT                         ATGCGAAGACAATGCCCGGAGTGACTGCTCCGTTCGAGAACATCTTCGACC
genomic: TGACAAGGTCTCTCCTGATCCAGCCGTCGTGCCCCCAAATGTGCTCGAGTgtaagacctc ... atcgttgcagATGCGAAGACAATGCCCGGAGTGACTGCTCCGTTCGAGAACATCTTCGACC
EST: gi|162201217|gb|FC378452.1|FC378452
EST:     TGACAAGGTCTCTCCTGATCCAGCCGTCGTGCCCCCAAATGTGCTCGAGT                         ATGCGAAGACAATGGCCGGAGTGACTGCTCCGTTCGAGAACATTTTCGACC
genomic: TGACAAGGTCTCTCCTGATCCAGCCGTCGTGCCCCCAAATGTGCTCGAGTgtaagacctc ... atcgttgcagATGCGAAGACAATGCCCGGAGTGACTGCTCCGTTCGAGAACATCTTCGACC
EST: gi|15319944|gb|BI487268.1|BI487268
EST:     TGACAAGGTCTCTCCTGATCCAACCGTCGTGCCCCCAAATGTGCTCGAGT                         ATGCGAAGACAATGCCCGGAGTGACTGCTCCGATCAAGAACATCTTCGACC
genomic: TGACAAGGTCTCTCCTGATCCAGCCGTCGTGCCCCCAAATGTGCTCGAGTgtaagacctc ... atcgttgcagATGCGAAGACAATGCCCGGAGTGACTGCTCCGTTCGAGAACATCTTCGACC
EST: gi|208362824|gb|DC950624.1|DC950624
EST:     TGACAAGGTCTCTCCTGATCCAGCCGTCGTGCCCCCAAATGTGCTCGAGT                         ATGCGAAGACAATGCCCGGAGTGACTGCTCCGTTCGAGAACATCTTCGACC
genomic: TGACAAGGTCTCTCCTGATCCAGCCGTCGTGCCCCCAAATGTGCTCGAGTgtaagacctc ... atcgttgcagATGCGAAGACAATGCCCGGAGTGACTGCTCCGTTCGAGAACATCTTCGACC
EST: gi|162216579|gb|FC392476.1|FC392476
EST:     TGACAAGGTCTCTCCTGATCCAGCCGTCGTGCCCCCAAATGTGCTCGAGT                         ATGCGAAGACAATGGCCGGAGTGACTGCTCCGTTCGAGAACATTTTCGACC
genomic: TGACAAGGTCTCTCCTGATCCAGCCGTCGTGCCCCCAAATGTGCTCGAGTgtaagacctc ... atcgttgcagATGCGAAGACAATGCCCGGAGTGACTGCTCCGTTCGAGAACATCTTCGACC
EST: gi|162274832|gb|FC451067.1|FC451067
EST:     TGACAAGGTCTCTCCTGATCCAGCCGTCGTGCCCCCAAATGTGCTCGAGT                         ATGCGAAGACAATGCCCGGAGTGACTGCTCCGTTCGAGAACATCTTCGACC
genomic: TGACAAGGTCTCTCCTGATCCAGCCGTCGTGCCCCCAAATGTGCTCGAGTgtaagacctc ... atcgttgcagATGCGAAGACAATGCCCGGAGTGACTGCTCCGTTCGAGAACATCTTCGACC
EST: gi|208359813|gb|DC938918.1|DC938918
EST:     TGACAAGGTCTCTCCTGATCCAGCCGTCGTGCCCCCAAATGTGCTCGAGT                         ATGCGAAGACAATGCCCGGAGTGACTGCTCCGTTCGAGAACATCTTCGACC
genomic: TGACAAGGTCTCTCCTGATCCAGCCGTCGTGCCCCCAAATGTGCTCGAGTgtaagacctc ... atcgttgcagATGCGAAGACAATGCCCGGAGTGACTGCTCCGTTCGAGAACATCTTCGACC
EST: gi|18374220|gb|BJ205798.1|BJ205798
EST:     TGACAAGGTCTCTCCTGATCCAGCCGTCGTGCCCCCAAATGTGCTCGAGT                         ATGCGAAGACAATGCCCGGAGTGACTGCTCCGTTCGAGAACATCTTCGACC
genomic: TGACAAGGTCTCTCCTGATCCAGCCGTCGTGCCCCCAAATGTGCTCGAGTgtaagacctc ... atcgttgcagATGCGAAGACAATGCCCGGAGTGACTGCTCCGTTCGAGAACATCTTCGACC
EST: gi|208352377|gb|DC906174.1|DC906174
EST:     TGACAAGGTCTCTCCTGATCCAGCCGTCGTGCCCCCAAATGTGCTCGAGT                         ATGCGAAGACAATGCCCGGAGTGACTGCTCCGTTCGAGAACATCTTCGACC
genomic: TGACAAGGTCTCTCCTGATCCAGCCGTCGTGCCCCCAAATGTGCTCGAGTgtaagacctc ... atcgttgcagATGCGAAGACAATGCCCGGAGTGACTGCTCCGTTCGAGAACATCTTCGACC
EST: gi|208347653|gb|DC912870.1|DC912870
EST:     TGACAAGGTCTCTCCTGATCCAGCCGTCGTGCCCCCAAATGTGCTCGAGT                         ATGCGAAGACAATGCCCGGAGTGACTGCTCCGTTCGAGAACATCTTCGACC
genomic: TGACAAGGTCTCTCCTGATCCAGCCGTCGTGCCCCCAAATGTGCTCGAGTgtaagacctc ... atcgttgcagATGCGAAGACAATGCCCGGAGTGACTGCTCCGTTCGAGAACATCTTCGACC
EST: gi|162221315|gb|FC398502.1|FC398502
EST:     GATCCAGCCGTCGTGCCCCCAAATGTGCTCGAGT                         ATGCGAAGACAATGGCCGGAGTGACTGCTCCGTTCGAGAACATTTTCGACC
genomic: GATCCAGCCGTCGTGCCCCCAAATGTGCTCGAGTgtaagacctc ... atcgttgcagATGCGAAGACAATGCCCGGAGTGACTGCTCCGTTCGAGAACATCTTCGACC
EST: gi|208361748|gb|DC934988.1|DC934988
EST:     TGACAAGGTCTCTCCTGATCCAGCCGTCGTGCCCCCAAATGTGCTCGAGT                         ATGCGAAGACAATGCCCGGAGTGACTGCTCCGTTCGAGAACATCTTCGACC
genomic: TGACAAGGTCTCTCCTGATCCAGCCGTCGTGCCCCCAAATGTGCTCGAGTgtaagacctc ... atcgttgcagATGCGAAGACAATGCCCGGAGTGACTGCTCCGTTCGAGAACATCTTCGACC
EST: gi|208383655|gb|DC907046.1|DC907046
EST:     TGACAAGGTCTCTCCTGATCCAGCCGTCGTGCCCCCAAATGTGCTCGAGT                         ATGCGAAGACAATGCCCGGAGTGACTGCTCCGTTCGAGAACATCTTCGACC
genomic: TGACAAGGTCTCTCCTGATCCAGCCGTCGTGCCCCCAAATGTGCTCGAGTgtaagacctc ... atcgttgcagATGCGAAGACAATGCCCGGAGTGACTGCTCCGTTCGAGAACATCTTCGACC
EST: gi|100421527|gb|BY976213.1|BY976213
EST:     TGACAAGGTCTCTCCTGATCCAGCCGTCGTGCCCCCAAATGTGCTCGAGT                         ATGCGAAGACAATGCCCGGAGTGACTGCTCCGTTCGAGAACATCTTCGACC
genomic: TGACAAGGTCTCTCCTGATCCAGCCGTCGTGCCCCCAAATGTGCTCGAGTgtaagacctc ... atcgttgcagATGCGAAGACAATGCCCGGAGTGACTGCTCCGTTCGAGAACATCTTCGACC
EST: gi|162280307|gb|FC456324.1|FC456324
EST:     TGACAAGGTCTCTCCTGATCCAGCCGTCGTGCCCCCAAATGTGCTCGAGT                         ATGCGAAGACAATGCCCGGAGTGACTGCTCCGTTCGAGAACATCTTCGACC
genomic: TGACAAGGTCTCTCCTGATCCAGCCGTCGTGCCCCCAAATGTGCTCGAGTgtaagacctc ... atcgttgcagATGCGAAGACAATGCCCGGAGTGACTGCTCCGTTCGAGAACATCTTCGACC
EST: gi|208390627|gb|DC937559.1|DC937559
EST:     TGACAAGGTCTCTCCTGATCCAGCCGTCGTGCCCCCAAATGTGCTCGAGT                         ATGCGAAGACAATGCCCGGAGTGACTGCTCCGTTCGAGAACATCTTCGACC
genomic: TGACAAGGTCTCTCCTGATCCAGCCGTCGTGCCCCCAAATGTGCTCGAGTgtaagacctc ... atcgttgcagATGCGAAGACAATGCCCGGAGTGACTGCTCCGTTCGAGAACATCTTCGACC
EST: gi|208361398|gb|DC935099.1|DC935099
EST:     TGACAAGGTCTCTCCTGATCCAGCCGTCGTGCCCCCAAATGTGCTCGAGT                         ATGCGAAGACAATGCCCGGAGTGACTGCTCCGTTCGAGAACATCTTCGACC
genomic: TGACAAGGTCTCTCCTGATCCAGCCGTCGTGCCCCCAAATGTGCTCGAGTgtaagacctc ... atcgttgcagATGCGAAGACAATGCCCGGAGTGACTGCTCCGTTCGAGAACATCTTCGACC
EST: gi|208356533|gb|DC914353.1|DC914353
EST:     TGACAAGGTCTCTCCTGATCCAGCCGTCGTGCCCCCAAATGTGCTCGAGT                         ATGCGAAGACAATGCCCGGAGTGACTGCTCCGTTCGAGAACATCTTCGACC
genomic: TGACAAGGTCTCTCCTGATCCAGCCGTCGTGCCCCCAAATGTGCTCGAGTgtaagacctc ... atcgttgcagATGCGAAGACAATGCCCGGAGTGACTGCTCCGTTCGAGAACATCTTCGACC
EST: gi|162258557|gb|FC434772.1|FC434772
EST:     TGACAAGGTCTCTCCTGATCCAGCCGTCGTGCCCCCAAATGTGCTCGAGT                         ATGCGAAGACAATGCCCGGAGTGACTGCTCCGTTCGAGAACATCTTCGACC
genomic: TGACAAGGTCTCTCCTGATCCAGCCGTCGTGCCCCCAAATGTGCTCGAGTgtaagacctc ... atcgttgcagATGCGAAGACAATGCCCGGAGTGACTGCTCCGTTCGAGAACATCTTCGACC
EST: gi|67570152|gb|BJ942976.1|BJ942976
EST:     TGACAAGGTCTCTCCTGATCCAGCCGTCGTGCCCCCAAATGTGCTCGAGT                         ATGCGAAGACAATGCCCGGAGTGACTGCTCCGTTCGAGAACATCTTCGACC
genomic: TGACAAGGTCTCTCCTGATCCAGCCGTCGTGCCCCCAAATGTGCTCGAGTgtaagacctc ... atcgttgcagATGCGAAGACAATGCCCGGAGTGACTGCTCCGTTCGAGAACATCTTCGACC
EST: gi|208370011|gb|DC940346.1|DC940346
EST:     TGACAAGGTCTCTCCTGATCCAGCCGTCGTGCCCCCAAATGTGCTCGAGT                         ATGCGAAGACAATGCCCGGAGTGACTGCTCCGTTCGAGAACATCTTCGACC
genomic: TGACAAGGTCTCTCCTGATCCAGCCGTCGTGCCCCCAAATGTGCTCGAGTgtaagacctc ... atcgttgcagATGCGAAGACAATGCCCGGAGTGACTGCTCCGTTCGAGAACATCTTCGACC
EST: gi|100393299|gb|BY989812.1|BY989812
EST:     TGACAAGGTCTCTCCTGATCCAGCCGTCGTGCCCCCAAATGTGCTCGAGT                         ATGCGAAGACAATGCCCGGAGTGACTGCTCCGTTCGAGAACATCTTCGACC
genomic: TGACAAGGTCTCTCCTGATCCAGCCGTCGTGCCCCCAAATGTGCTCGAGTgtaagacctc ... atcgttgcagATGCGAAGACAATGCCCGGAGTGACTGCTCCGTTCGAGAACATCTTCGACC
EST: gi|162269205|gb|FC444748.1|FC444748
EST:     TGACAAGGTCTCTCCTGATCCAGCCGTCGTGCCCCCAAATGTGCTCGAGT                         ATGCGAAGACAATGCCCGGAGTGACTGCTCCGTTCGAGAACATCTTCGACC
genomic: TGACAAGGTCTCTCCTGATCCAGCCGTCGTGCCCCCAAATGTGCTCGAGTgtaagacctc ... atcgttgcagATGCGAAGACAATGCCCGGAGTGACTGCTCCGTTCGAGAACATCTTCGACC
EST: gi|100399838|gb|BY990647.1|BY990647
EST:     TGACAAGGTCTCTCCTGATCCAGCCGTCGTGCCCCCAAATGTGCTCGAGT                         ATGCGAAGACAATGCCCGGAGTGACTGCTCCGTTCGAGAACATCTTCGACC
genomic: TGACAAGGTCTCTCCTGATCCAGCCGTCGTGCCCCCAAATGTGCTCGAGTgtaagacctc ... atcgttgcagATGCGAAGACAATGCCCGGAGTGACTGCTCCGTTCGAGAACATCTTCGACC
EST: gi|208384860|gb|DC907473.1|DC907473
EST:     TGACAAGGTCTCTCCTGATCCAGCCGTCGTGCCCCCAAATGTGCTCGAGT                         ATGCGAAGACAATGCCCGGAGTGACTGCTCCGTTCGAGAACATCTTCGACC
genomic: TGACAAGGTCTCTCCTGATCCAGCCGTCGTGCCCCCAAATGTGCTCGAGTgtaagacctc ... atcgttgcagATGCGAAGACAATGCCCGGAGTGACTGCTCCGTTCGAGAACATCTTCGACC
EST: gi|208383357|gb|DC907532.1|DC907532
EST:     TGACAAGGTCTCTCCTGATCCAGCCGTCGTGCCCCCAAATGTGCTCGAGT                         ATGCGAAGACAATGCCCGGAGTGACTGCTCCGTTCGAGAACATCTTCGACC
genomic: TGACAAGGTCTCTCCTGATCCAGCCGTCGTGCCCCCAAATGTGCTCGAGTgtaagacctc ... atcgttgcagATGCGAAGACAATGCCCGGAGTGACTGCTCCGTTCGAGAACATCTTCGACC
EST: gi|100399007|gb|BY990626.1|BY990626
EST:     TGACAAGGTCTCTCCTGATCCAGCCGTCGTGCCCCCAAATGTGCTCGAGT                         ATGCGAAGACAATGCCCGGAGTGACTGCTCCGTTCGAGAACATCTTCGACC
genomic: TGACAAGGTCTCTCCTGATCCAGCCGTCGTGCCCCCAAATGTGCTCGAGTgtaagacctc ... atcgttgcagATGCGAAGACAATGCCCGGAGTGACTGCTCCGTTCGAGAACATCTTCGACC
EST: gi|162233539|gb|FC410921.1|FC410921
EST:     TGACAAGGTCTCTCCTGATCCAGCCGTCGTGCCCCCAAATGTGCTCGAGT                         ATGCGAAGACAATGGCCGGAGTGACTGCTCCGTTCGAGAACATTTTCGACC
genomic: TGACAAGGTCTCTCCTGATCCAGCCGTCGTGCCCCCAAATGTGCTCGAGTgtaagacctc ... atcgttgcagATGCGAAGACAATGCCCGGAGTGACTGCTCCGTTCGAGAACATCTTCGACC
EST: gi|208388790|gb|DC941799.1|DC941799
EST:     TGACAAGGTCTCTCCTGATCCAGCCGTCGTGCCCCCAAATGTGCTCGAGT                         ATGCGAAGACAATGCCCGGAGTGACTGCTCCGTTCGAGAACATCTTCGACC
genomic: TGACAAGGTCTCTCCTGATCCAGCCGTCGTGCCCCCAAATGTGCTCGAGTgtaagacctc ... atcgttgcagATGCGAAGACAATGCCCGGAGTGACTGCTCCGTTCGAGAACATCTTCGACC
EST: gi|162253531|gb|FC429554.1|FC429554
EST:     TGACAAGGTCTCTCCTGATCCAGCCGTCGTGCCCCCAAATGTGCTCGAGT                         ATGCGAAGACAATGGCCGGAGTGACTGCTCCGTTCGAGAACATTTTCGACC
genomic: TGACAAGGTCTCTCCTGATCCAGCCGTCGTGCCCCCAAATGTGCTCGAGTgtaagacctc ... atcgttgcagATGCGAAGACAATGCCCGGAGTGACTGCTCCGTTCGAGAACATCTTCGACC
EST: gi|162271446|gb|FC446395.1|FC446395
EST:     TGACAAGGTCTCTCCTGATCCAGCCGTCGTGCCCCCAAATGTGCTCGAGT                         ATGCGAAGACAATGCCCGGAGTGACTGCTCCGTTCGAGAACATCTTCGACC
genomic: TGACAAGGTCTCTCCTGATCCAGCCGTCGTGCCCCCAAATGTGCTCGAGTgtaagacctc ... atcgttgcagATGCGAAGACAATGCCCGGAGTGACTGCTCCGTTCGAGAACATCTTCGACC
EST: gi|208390695|gb|DC937851.1|DC937851
EST:     TGACAAGGTCTCTCCTGATCCAGCCGTCGTGCCCCCAAATGTGCTCGAGT                         ATGCGAAGACAATGCCCGGAGTGACTGCTCCGTTCGAGAACATCTTCGACC
genomic: TGACAAGGTCTCTCCTGATCCAGCCGTCGTGCCCCCAAATGTGCTCGAGTgtaagacctc ... atcgttgcagATGCGAAGACAATGCCCGGAGTGACTGCTCCGTTCGAGAACATCTTCGACC
EST: gi|22133097|gb|BQ827543.1|BQ827543
EST:     TGACAAGGTCTCTCCTGATCCAGCCGTCGTGCCCCCAAATGTGCTCGAGT                         ATGCGAAGACAATGCCCGGAGTGACTGCTCCGTTCGAGAACATCTTCGACC
genomic: TGACAAGGTCTCTCCTGATCCAGCCGTCGTGCCCCCAAATGTGCTCGAGTgtaagacctc ... atcgttgcagATGCGAAGACAATGCCCGGAGTGACTGCTCCGTTCGAGAACATCTTCGACC
EST: gi|208347746|gb|DC912921.1|DC912921
EST:     TGACAAGGTCTCTCCTGATCCAGCCGTCGTGCCCCCAAATGTGCTCGAGT                         ATGCGAAGACAATGCCCGGAGTGACTGCTCCGTTCGAGAACATCTTCGACC
genomic: TGACAAGGTCTCTCCTGATCCAGCCGTCGTGCCCCCAAATGTGCTCGAGTgtaagacctc ... atcgttgcagATGCGAAGACAATGCCCGGAGTGACTGCTCCGTTCGAGAACATCTTCGACC
EST: gi|208353097|gb|DC910148.1|DC910148
EST:     TGACAAGGTCTCTCCTGATCCAGCCGTCGTGCCCCCAAATGTGCTCGAGT                         ATGCGAAGACAATGCCCGGAGTGACTGCTCCGTTCGAGAACATCTTCGACC
genomic: TGACAAGGTCTCTCCTGATCCAGCCGTCGTGCCCCCAAATGTGCTCGAGTgtaagacctc ... atcgttgcagATGCGAAGACAATGCCCGGAGTGACTGCTCCGTTCGAGAACATCTTCGACC
EST: gi|162236687|gb|FC413782.1|FC413782
EST:     TGACAAGGTCTCTCCTGATCCAGCCGTCGTGCCCCCAAATGTGCTCGAGT                         ATGCGAAGACAATGGCCGGAGTGACTGCTCCGTTCGAGAACATTTTCGACC
genomic: TGACAAGGTCTCTCCTGATCCAGCCGTCGTGCCCCCAAATGTGCTCGAGTgtaagacctc ... atcgttgcagATGCGAAGACAATGCCCGGAGTGACTGCTCCGTTCGAGAACATCTTCGACC
EST: gi|162241782|gb|FC417309.1|FC417309
EST:     TGACAAGGTCTCTCCTGATCCAGCCGTCGTGCCCCCAAATGTGCTCGAGT                         ATGCGAAGACAATGGCCGGAGTGACTGCTCCGTTCGAGAACATTTTCGACC
genomic: TGACAAGGTCTCTCCTGATCCAGCCGTCGTGCCCCCAAATGTGCTCGAGTgtaagacctc ... atcgttgcagATGCGAAGACAATGCCCGGAGTGACTGCTCCGTTCGAGAACATCTTCGACC
EST: gi|100390948|gb|BY989431.1|BY989431
EST:     TGACAAGGTCTCTCCTGATCCAGCCGTCGTGCCCCCAAATGTGCTCGAGT                         ATGCGAAGACAATGCCCGGAGTGACTGCTCCGTTCGAGAACATCTTCGACC
genomic: TGACAAGGTCTCTCCTGATCCAGCCGTCGTGCCCCCAAATGTGCTCGAGTgtaagacctc ... atcgttgcagATGCGAAGACAATGCCCGGAGTGACTGCTCCGTTCGAGAACATCTTCGACC
EST: gi|67571861|gb|BJ944685.1|BJ944685
EST:     TGACAAGGTCTCTCCTGATCCAGCCGTCGTGCCCCCAAATGTGCTCGAGT                         ATGCGAAGACAATGCCCGGAGTGACTGCTCCGTTCGAGAACATCTTCGACC
genomic: TGACAAGGTCTCTCCTGATCCAGCCGTCGTGCCCCCAAATGTGCTCGAGTgtaagacctc ... atcgttgcagATGCGAAGACAATGCCCGGAGTGACTGCTCCGTTCGAGAACATCTTCGACC
EST: gi|208352511|gb|DC910211.1|DC910211
EST:     TGACAAGGTCTCTCCTGATCCAGCCGTCGTGCCCCCAAATGTGCTCGAGT                         ATGCGAAGACAATGCCCGGAGTGACTGCTCCGTTCGAGAACATCTTCGACC
genomic: TGACAAGGTCTCTCCTGATCCAGCCGTCGTGCCCCCAAATGTGCTCGAGTgtaagacctc ... atcgttgcagATGCGAAGACAATGCCCGGAGTGACTGCTCCGTTCGAGAACATCTTCGACC
EST: gi|162256064|gb|FC431237.1|FC431237
EST:     TGACAAGGTCTCTCCTGATCCAGCCGTCGTGCCCCCAAATGTGCTCGAGT                         ATGCGAAGACAATGCCCGGAGTGACTGCTCCGTTCGAGAACATCTTCGACC
genomic: TGACAAGGTCTCTCCTGATCCAGCCGTCGTGCCCCCAAATGTGCTCGAGTgtaagacctc ... atcgttgcagATGCGAAGACAATGCCCGGAGTGACTGCTCCGTTCGAGAACATCTTCGACC
EST: gi|19782024|gb|BQ039800.1|BQ039800
EST:     TGACAAGGTCTCTCCTGATCCAGCCGTCGTGCCCCCAAATGTGCTCGAGT                         ATGCGAAGACAATGCCCGGAGTGACTGCTCCGTTCGAGAACATCTTCGACC
genomic: TGACAAGGTCTCTCCTGATCCAGCCGTCGTGCCCCCAAATGTGCTCGAGTgtaagacctc ... atcgttgcagATGCGAAGACAATGCCCGGAGTGACTGCTCCGTTCGAGAACATCTTCGACC
EST: gi|162271096|gb|FC447137.1|FC447137
EST:     TGACAAGGTCTCTCCTGATCCAGCCGTCGTGCCCCCAAATGTGCTCGAGT                         ATGCGAAGACAATGCCCGGAGTGACTGCTCCGTTCGAGAACATCTTCGACC
genomic: TGACAAGGTCTCTCCTGATCCAGCCGTCGTGCCCCCAAATGTGCTCGAGTgtaagacctc ... atcgttgcagATGCGAAGACAATGCCCGGAGTGACTGCTCCGTTCGAGAACATCTTCGACC
EST: gi|208376940|gb|DC911036.1|DC911036
EST:     TGACAAGGTCTCTCCTGATCCAGCCGTCGTGCCCCCAAATGTGCTCGAGT                         ATGCGAAGACAATGCCCGGAGTGACTGCTCCGTTCGAGAACATCTTCGACC
genomic: TGACAAGGTCTCTCCTGATCCAGCCGTCGTGCCCCCAAATGTGCTCGAGTgtaagacctc ... atcgttgcagATGCGAAGACAATGCCCGGAGTGACTGCTCCGTTCGAGAACATCTTCGACC
EST: gi|162249923|gb|FC427648.1|FC427648
EST:     TGACAAGGTCTCTCCTGATCCAGCCGTCGTGCCCCCAAATGTGCTCGAGT                         ATGCGAAGACAATGGCCGGAGTGACTGCTCCGTTCGAGAACATTTTCGACC
genomic: TGACAAGGTCTCTCCTGATCCAGCCGTCGTGCCCCCAAATGTGCTCGAGTgtaagacctc ... atcgttgcagATGCGAAGACAATGCCCGGAGTGACTGCTCCGTTCGAGAACATCTTCGACC
EST: gi|18331754|gb|BJ163765.1|BJ163765
EST:     TGACAAGGTCTCTCCTGATCCAGCCGTCGTGCCCCCAAATGTGCTCGAGT                         ATGCGAAGACAATGCCCGGAGTGACTGCTCCGTTCGAGAACATCTTCGACC
genomic: TGACAAGGTCTCTCCTGATCCAGCCGTCGTGCCCCCAAATGTGCTCGAGTgtaagacctc ... atcgttgcagATGCGAAGACAATGCCCGGAGTGACTGCTCCGTTCGAGAACATCTTCGACC
EST: gi|22132953|gb|BQ827455.1|BQ827455
EST:     TGACAAGGTCTCTCCTGATCCAGCCGTCGTGCCCCCAAATGTGCTCGAGT                         ATGCGAAGACAATGCCCGGAGTGACTGCTCCGTTCGAGAACATCTTCGACC
genomic: TGACAAGGTCTCTCCTGATCCAGCCGTCGTGCCCCCAAATGTGCTCGAGTgtaagacctc ... atcgttgcagATGCGAAGACAATGCCCGGAGTGACTGCTCCGTTCGAGAACATCTTCGACC
EST: gi|22132936|gb|BQ827447.1|BQ827447
EST:     TGACAAGGTCTCTCCTGATCCAGCCGTCGTGCCCCCAAATGTGCTCGAGT                         ATGCGAAGACTATGCCCGGAGTGACTGCTCCGTTCGAGAACATCTTCGACC
genomic: TGACAAGGTCTCTCCTGATCCAGCCGTCGTGCCCCCAAATGTGCTCGAGTgtaagacctc ... atcgttgcagATGCGAAGACAATGCCCGGAGTGACTGCTCCGTTCGAGAACATCTTCGACC
EST: gi|208381216|gb|DC903960.1|DC903960
EST:     TGACAAGGTCTCTCCTGATCCAGCCGTCGTGCCCCCAAATGTGCTCGAGT                         ATGCGAAGACAATGCCCGGAGTGACTGCTCCGTTCGAGAACATCTTCGACC
genomic: TGACAAGGTCTCTCCTGATCCAGCCGTCGTGCCCCCAAATGTGCTCGAGTgtaagacctc ... atcgttgcagATGCGAAGACAATGCCCGGAGTGACTGCTCCGTTCGAGAACATCTTCGACC
EST: gi|100365240|gb|BY966880.1|BY966880
EST:     TGACAAGGTCTCTCCTGATCCAGCCGTCGTGCCCCCAAATGTGCTCGAGT                         ATGCGAAGACAATGCCCGGAGTGACTGCTCCGTTCGAGAACATCTTCGACC
genomic: TGACAAGGTCTCTCCTGATCCAGCCGTCGTGCCCCCAAATGTGCTCGAGTgtaagacctc ... atcgttgcagATGCGAAGACAATGCCCGGAGTGACTGCTCCGTTCGAGAACATCTTCGACC
EST: gi|162229164|gb|FC404523.1|FC404523
EST:     TGACAAGGTCTCTCCTGATCCAGCCGTCGTGCCCCCAAATGTGCTCGAGT                         ATGCGAAGACAATGGCCGGAGTGACTGCTCCGTTCGAGAACATTTTCGACC
genomic: TGACAAGGTCTCTCCTGATCCAGCCGTCGTGCCCCCAAATGTGCTCGAGTgtaagacctc ... atcgttgcagATGCGAAGACAATGCCCGGAGTGACTGCTCCGTTCGAGAACATCTTCGACC

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 34 (upstream exon), 35 (downstream exon)
Score: 221

GCACCTCACGCAACGAGGCGCACTTCTGTGCTGCACATCAGCGCTGTAGCTGACAAGGTCTCTCCTGATCCAGCCGTCGTGCCCCCAAATGTGCTCGAGTgtaagacctc ... atcgttgcagATGCGAAGACAATGCCCGGAGTGACTGCTCCGTTCGAGAACATCTTCGACCCTGCTGACCTCCTGGCCCGCGCTGCCTCCAGCCCCCGACCCATTAAGGA




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 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ggagcgcttgcctcgtgttagctttgtatattgactttttcgttcatcgttgcagATGCGAAGACAATGCCCGGAGTGACTGCTCCGTTCGAGAACATCTTCGACCCTGCTGACCTCCTGGCCCGCGCTGCCTCCAGCCCCCGACCCATTAAGGA
                            tattgac  putative branch site (score: 221)
                                  ctttttcgttcatc  CT-rich tract
                          tatattgacttttt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ttagatatacgtgtttctcgtggctgcactccgtcagcgtcgatcggagcgcttgcctcgtgttagctttgtatattgactttttcgttcatcgttgcagATGCGAAGACAATGCCCGGAGTGACTGCTCCGTTCGAGAACATCTTCGACCCTGCTGACCTCCTGGCCCGCGCTGCCTCCAGCCCCCGACCCATTAAGGA

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