1 5' 3' | 2 5' 3' | 3 5' 3' |
GTGACGATGGAGTCGTTGCTTTCTTGGATTAAGGATAATCTTATAAAAGAAAGGCCAGAGATGTTTGTGAAAGAGAGCTCAGTgtaagatttccaagttttcttaccgcttgtaggattacatcgtctacatgaattgcagtgtaatttatttttctttatttttttcgttgttgttgttgca...
species | Physcomitrella patens |
transcript | PP1S99_92V6.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: GATAATCTTATAAAAGAAAGGCCAGAGATGTTTGTGAAAGAGAGCTCAGT GCGACCAGGCGTGCTTGTTTTGATCAATGACAGCGACTGGGAGCTTTGTGGEST: gi|162212503|gb|FC388479.1|FC388479
genomic: GATAATCTTATAAAAGAAAGGCCAGAGATGTTTGTGAAAGAGAGCTCAGTgtaagatttc ... tttcatgcagGCGACCAGGCGTGCTTGTTTTGATCAATGACAGCGACTGGGAGCTTTGTGG
EST: GATAATCTTATAAAAGAAAGGCCAGAGATGTTTGTGAAAGAGAGCTCAGT GCGACCAGGCGTGCTTGTTTTGATCAATGACAGCGACTGGGAGCTTTGTGGEST: gi|162207523|gb|FC383768.1|FC383768
genomic: GATAATCTTATAAAAGAAAGGCCAGAGATGTTTGTGAAAGAGAGCTCAGTgtaagatttc ... tttcatgcagGCGACCAGGCGTGCTTGTTTTGATCAATGACAGCGACTGGGAGCTTTGTGG
EST: GATAATCTTATAAAAGAAAGGCCAGAGATGTTTGTGAAAGAGAGCTCAGT GCGACCAGGCGTGCTTGTTTTGATCAATGACAGCGACTGGGAGCTTTGTGGEST: gi|67508402|gb|BJ941269.1|BJ941269
genomic: GATAATCTTATAAAAGAAAGGCCAGAGATGTTTGTGAAAGAGAGCTCAGTgtaagatttc ... tttcatgcagGCGACCAGGCGTGCTTGTTTTGATCAATGACAGCGACTGGGAGCTTTGTGG
EST: GATAATCTTATAAAAGAAAGGCCAGAGATGTTTGTGAAAGAGAGCTCAGT GCGACCAGGCGTGCTTGTTTTGATCAATGACAGCGACTGGGAGCTTTGTGGEST: gi|162234374|gb|FC410120.1|FC410120
genomic: GATAATCTTATAAAAGAAAGGCCAGAGATGTTTGTGAAAGAGAGCTCAGTgtaagatttc ... tttcatgcagGCGACCAGGCGTGCTTGTTTTGATCAATGACAGCGACTGGGAGCTTTGTGG
EST: GATAATCTTATAAAAGAAAGGCCAGAGATGTTTGTGAAAGAGAGCTCAGT GCGACCAGGCGTGCTTGTTTTGATCAATGACAGCGACTGGGAGCTTTGTGGEST: gi|67508356|gb|BJ941224.1|BJ941224
genomic: GATAATCTTATAAAAGAAAGGCCAGAGATGTTTGTGAAAGAGAGCTCAGTgtaagatttc ... tttcatgcagGCGACCAGGCGTGCTTGTTTTGATCAATGACAGCGACTGGGAGCTTTGTGG
EST: GATAATCTTATAAAAGAAAGGCCAGAGATGTTTGTGAAAGAGAGCTCAGT GCGACCAGGCGTGCTTGTTTTGATCAATGACAGCGACTGGGAGCTTTGTGGEST: gi|67691570|gb|BJ951803.1|BJ951803
genomic: GATAATCTTATAAAAGAAAGGCCAGAGATGTTTGTGAAAGAGAGCTCAGTgtaagatttc ... tttcatgcagGCGACCAGGCGTGCTTGTTTTGATCAATGACAGCGACTGGGAGCTTTGTGG
EST: GATAATCTTATAAAAGAAAGGCCAGAGATGTTTGTGAAAGAGAGCTCAGT GCGACCAGGCGTGCTTGTTTTGATCAATGACAGCGACTGGGAGCTTTGTGG
genomic: GATAATCTTATAAAAGAAAGGCCAGAGATGTTTGTGAAAGAGAGCTCAGTgtaagatttc ... tttcatgcagGCGACCAGGCGTGCTTGTTTTGATCAATGACAGCGACTGGGAGCTTTGTGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTGACGATGGAGTCGTTGCTTTCTTGGATTAAGGATAATCTTATAAAAGAAAGGCCAGAGATGTTTGTGAAAGAGAGCTCAGTgtaagatttccaagttttcttaccgcttgtaggattacatcgtctacatgaattgcagtgtaatttatttttctttatttttttcgttgttgttgttgca
- - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA