1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
GGAGCTTGCACACGAAGGAGCGTGCGAAAATGCAATCTTTCCGGACTCTGTCTATGTTCAAGATCGCTGCGTTTTCCCAGCAGGAATGATTCAAGAAGGGgtattcgatcaccgcccatttctatttgagaagtgttacttaggttggattgcagactgcacgattttggtgccccgatgttgtcagtttcttgtatgtagtgtttatttcaacgcttgcgtaactcgcttcatgtgcctgttgaccttgttcag
species | Physcomitrella patens |
transcript | PP1S99_42V6.3 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: CTATGTTCAAGATCGCTGCGTTTTCCCAGCAGGAATGATTNCA-GAAGGG GGAGATCGGTGTGATTTGGATATTGTGCCTGEST: gi|162257182|gb|FC433058.1|FC433058
genomic: CTATGTTCAAGATCGCTGCGTTTTCCCAGCAGGAATGATT-CAAGAAGGGgtattcgatc ... ccttgttcagGGAGATCGGTGTGATTTGGATATTGTGCCTG
EST: TCTATGTTCAAGATCGCTGCGTTTTCCCAGCAGGAATGATTCAAGAAGGG GGAGATCGGTGTGATTTGGATATTGTGCCTGGATGCACCGACCCGGAATCGEST: gi|162195533|gb|FC371834.1|FC371834
genomic: TCTATGTTCAAGATCGCTGCGTTTTCCCAGCAGGAATGATTCAAGAAGGGgtattcgatc ... ccttgttcagGGAGATCGGTGTGATTTGGATATTGTGCCTGGATGCACCGACCCGGAATCG
EST: TCTATGTTCAAGATCGCTGCGTTTTCCCAGCAGGAATGATTCAAGAAGGG GGAGATCGGTGTGATTTGGATATTGTGCCTGGATGCACCGACCCGGAATCGEST: gi|162226250|gb|FC402958.1|FC402958
genomic: TCTATGTTCAAGATCGCTGCGTTTTCCCAGCAGGAATGATTCAAGAAGGGgtattcgatc ... ccttgttcagGGAGATCGGTGTGATTTGGATATTGTGCCTGGATGCACCGACCCGGAATCG
EST: TCTATGTTCAAGATCGCTGCGTTTTCCCAGCAGGAATGATTCAAGAAGGG GGAGATCGGTGTGATTTGGATATTGTGCCTGGATGCACCGACCCGGAATCGEST: gi|162226251|gb|FC402959.1|FC402959
genomic: TCTATGTTCAAGATCGCTGCGTTTTCCCAGCAGGAATGATTCAAGAAGGGgtattcgatc ... ccttgttcagGGAGATCGGTGTGATTTGGATATTGTGCCTGGATGCACCGACCCGGAATCG
EST: TCTATGTTCAAGATCGCTGCGTTTTCCCAGCAGGAATGATTCAAGAAGGG GGAGATCGGTGTGATTTGGATATTGTGCCTGGATGCACCGACCCGGAATCGEST: gi|162207626|gb|FC384079.1|FC384079
genomic: TCTATGTTCAAGATCGCTGCGTTTTCCCAGCAGGAATGATTCAAGAAGGGgtattcgatc ... ccttgttcagGGAGATCGGTGTGATTTGGATATTGTGCCTGGATGCACCGACCCGGAATCG
EST: TCTATGTTCAAGATCGCTGCGTTTTCCCAGCAGGAATGATTCAAGAAGGG GGAGATCGGTGTGATTTGGATATTGTGCCTGGATGCACCGACCCGGAATCGEST: gi|162159900|gb|FC336153.1|FC336153
genomic: TCTATGTTCAAGATCGCTGCGTTTTCCCAGCAGGAATGATTCAAGAAGGGgtattcgatc ... ccttgttcagGGAGATCGGTGTGATTTGGATATTGTGCCTGGATGCACCGACCCGGAATCG
EST: TCTATGTTCAAGATCGCTGCGTTTTCCCAGCAGGAATGATTCAAGAAGGG GGAGATCGGTGTGATTTGGATATTGTGCCTGGATGCACCGACCCGGAATCGEST: gi|162227789|gb|FC402704.1|FC402704
genomic: TCTATGTTCAAGATCGCTGCGTTTTCCCAGCAGGAATGATTCAAGAAGGGgtattcgatc ... ccttgttcagGGAGATCGGTGTGATTTGGATATTGTGCCTGGATGCACCGACCCGGAATCG
EST: TCTATGTTCAAGATCGCTGCGTTTTCCCAGCAGGAATGATTCAAGAAGGG GGAGATCGGTGTGATTTGGATATTGTGCCTGGATGCACCGACCCGGAATCGEST: gi|162227790|gb|FC402705.1|FC402705
genomic: TCTATGTTCAAGATCGCTGCGTTTTCCCAGCAGGAATGATTCAAGAAGGGgtattcgatc ... ccttgttcagGGAGATCGGTGTGATTTGGATATTGTGCCTGGATGCACCGACCCGGAATCG
EST: TCTATGTTCAAGATCGCTGCGTTTTCCCAGCAGGAATGATTCAAGAAGGG GGAGATCGGTGTGATTTGGATATTGTGCCTGGATGCACCGACCCGGAATCG
genomic: TCTATGTTCAAGATCGCTGCGTTTTCCCAGCAGGAATGATTCAAGAAGGGgtattcgatc ... ccttgttcagGGAGATCGGTGTGATTTGGATATTGTGCCTGGATGCACCGACCCGGAATCG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGAGCTTGCACACGAAGGAGCGTGCGAAAATGCAATCTTTCCGGACTCTGTCTATGTTCAAGATCGCTGCGTTTTCCCAGCAGGAATGATTCAAGAAGGGgtattcgatcaccgcccatttctatttgagaagtgttacttaggttggattgcagactgcacgattttggtgccccgatgttgtcagtttcttgtatgtagtgtttatttcaacgcttgcgtaactcgcttcatgtgcctgttgaccttgttcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG