Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|67726939|gb|BJ977198.1|BJ977198EST: TCCCCGCCATAGGCAAGAGTCTTGGCAAAACTGTGAAGAGCTTTCAGACG GCGGCGAAAGAGTTCGAATCAGAAATTTCCAAGGCAAAGGAGTCTGGCGAG
genomic: TCCCCGCCATAGGCAAGAGTCTTGGCAAAACTGTGAAGAGCTTTCAGACGgtacgcacgg ... tttgttgcagGCGGCGAAAGAGTTCGAATCAGAAATTTCCAAGGCAAAGGAGTCTGGCGAG
EST:
gi|67575304|gb|BJ948128.1|BJ948128EST: TCCCCGCCATAGGCAAGAGTCTTGGCAAAACTGTGAAGAGCTTTCAGACG GCGGCGAAAGAGTTCGAATCAGAAATTTCCAAGGCAAAGGAGTCTGGCGAG
genomic: TCCCCGCCATAGGCAAGAGTCTTGGCAAAACTGTGAAGAGCTTTCAGACGgtacgcacgg ... tttgttgcagGCGGCGAAAGAGTTCGAATCAGAAATTTCCAAGGCAAAGGAGTCTGGCGAG
EST:
gi|162270247|gb|FC447259.1|FC447259EST: TCCCCGCCATAGGCAAGAGTCTTGGCAAAACTGTGAAGAGCTTTCAGACG GCGGCGAAAGAGTTCGAATCAGAAATTTCCAAGGCAAAGGAGTCTGGCGAG
genomic: TCCCCGCCATAGGCAAGAGTCTTGGCAAAACTGTGAAGAGCTTTCAGACGgtacgcacgg ... tttgttgcagGCGGCGAAAGAGTTCGAATCAGAAATTTCCAAGGCAAAGGAGTCTGGCGAG
EST:
gi|67701456|gb|BJ961689.1|BJ961689EST: TCCCCGCCATAGGCAAGAGTCTTGGCAAAACTGTGAAGAGCTTTCAGACG GCGGCGAAAGAGTTCGAATCAGAAATTTCCAAGGCAAAGGAGTCTGGCGAG
genomic: TCCCCGCCATAGGCAAGAGTCTTGGCAAAACTGTGAAGAGCTTTCAGACGgtacgcacgg ... tttgttgcagGCGGCGAAAGAGTTCGAATCAGAAATTTCCAAGGCAAAGGAGTCTGGCGAG
EST:
gi|67578555|gb|BJ950722.1|BJ950722EST: TCCCCGCCATAGGCAAGAGTCTTGGCAAAACTGTGAAGAGCTTTCAGACG GCGGCGAAAGAGTTCGAATCAGAAATTTCCAAGGCAAAGGAGTCTGGCGAG
genomic: TCCCCGCCATAGGCAAGAGTCTTGGCAAAACTGTGAAGAGCTTTCAGACGgtacgcacgg ... tttgttgcagGCGGCGAAAGAGTTCGAATCAGAAATTTCCAAGGCAAAGGAGTCTGGCGAG
EST:
gi|67698767|gb|BJ959000.1|BJ959000EST: TCCCCGCCATAGGCAAGAGTCTTGGCAAAACTGTGAAGAGCTTTCAGACG GCGGCGAAAGAGTTCGAATCAGAAATTTCCAAGGCAAAGGAGTCTGGCGAG
genomic: TCCCCGCCATAGGCAAGAGTCTTGGCAAAACTGTGAAGAGCTTTCAGACGgtacgcacgg ... tttgttgcagGCGGCGAAAGAGTTCGAATCAGAAATTTCCAAGGCAAAGGAGTCTGGCGAG
EST:
gi|19779126|gb|BQ039405.1|BQ039405EST: TCCCCGCCATAGGCAAGAGTCTTGGCAAAACTGTGAAGAGCTTTCAGACG GCGGCGAAAGAGTTCGAATCAGAAATTTCCAAGGCAAAGGAGTCTGGCGAG
genomic: TCCCCGCCATAGGCAAGAGTCTTGGCAAAACTGTGAAGAGCTTTCAGACGgtacgcacgg ... tttgttgcagGCGGCGAAAGAGTTCGAATCAGAAATTTCCAAGGCAAAGGAGTCTGGCGAG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GCTTGCAGTCATTGCCGGAGTGGCCGCCCTTGTGTTCGGCCCAAAGCAGCTCCCCGCCATAGGCAAGAGTCTTGGCAAAACTGTGAAGAGCTTTCAGACGgtacgcacgggatatacggtgtcttcatacctgcttataatttccttgtcattgggtgtgttatttttgcgtctacaccctagcaatgctgaatttggag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT