1 5' 3' | 2 5' 3' | 3 5' 3' |
...agattactgtcgccacagacccgttttgagcactgcgtgatacttctgccgaacacggaaactcatgtttttaacgttccacgtgtctctttgtctgcagGTTGGCTCATCCTGGAGGGGCCTTGGCCACAAATAAAGCAGCAGCACTCGCCAAGTTTCTTAAAAGGAAGTTGAATGAGCCAGGCGGCGTTGCAGCTCTG
species | Physcomitrella patens |
transcript | PP1S99_253V6.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GAGCAATTGCAACCTCGTGCGTCCACCTCCTCCAATCAACCGCAGCCCAG GTTGGCTCATCCTGGAGGGGCCTTGGCCACAAATAAAGCAGCAGCACTCGCEST: gi|67572753|gb|BJ945577.1|BJ945577
genomic: GAGCAATTGCAACCTCGTGCGTCCACCTCCTCCAATCAACCGCAGCCCAGgtacttggca ... ttgtctgcagGTTGGCTCATCCTGGAGGGGCCTTGGCCACAAATAAAGCAGCAGCACTCGC
EST: GAGCAATTGCAACCTCGTGCGTCCACCTCCTCCAATCAACCGCAGCCCAG GTTGGCTCATCCTGGAGGGGCCTTGGCCACAAATAAAGCAGCAGCACTCGC
genomic: GAGCAATTGCAACCTCGTGCGTCCACCTCCTCCAATCAACCGCAGCCCAGgtacttggca ... ttgtctgcagGTTGGCTCATCCTGGAGGGGCCTTGGCCACAAATAAAGCAGCAGCACTCGC
ctgccgaacacggaaactcatgtttttaacgttccacgtgtctctttgtctgcagGTTGGCTCATCCTGGAGGGGCCTTGGCCACAAATAAAGCAGCAGCACTCGCCAAGTTTCTTAAAAGGAAGTTGAATGAGCCAGGCGGCGTTGCAGCTCTG
ttttaac putative branch site (score: 3)
tctctttgtct putative PPT
atgtttttaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| agattactgtcgccacagacccgttttgagcactgcgtgatacttctgccgaacacggaaactcatgtttttaacgttccacgtgtctctttgtctgcagGTTGGCTCATCCTGGAGGGGCCTTGGCCACAAATAAAGCAGCAGCACTCGCCAAGTTTCTTAAAAGGAAGTTGAATGAGCCAGGCGGCGTTGCAGCTCTG
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