1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...gacgtgtgttgtttgcgctgaattttaattcctcctatgcgggtggcagtttagttatttgtgcgacgtgctaaattccatttgcctttcatgttttcagGTTCGCAGAAGGCTACAGCATGGTATGGGGGATCGCCTTGCAGAGTCTCTTCTCACCACTAACTCTACCATAGCATCTGAATATCTCACTCCTGATGAGA
species | Physcomitrella patens |
transcript | PP1S99_235V6.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: TGGATGAATTAGGGGGAGTTGATGAAAATGTCCAACGGAAACTAGAGGAG GTTCGCAGAAGGCTACAGCATGGTATGGGGGATCGCCTTGCAGAGTCTCTTEST: gi|162169555|gb|FC346119.1|FC346119
genomic: TGGATGAATTAGGGGGAGTTGATGAAAATGTCCAACGGAAACTAGAGGAGgtacgtactt ... atgttttcagGTTCGCAGAAGGCTACAGCATGGTATGGGGGATCGCCTTGCAGAGTCTCTT
EST: TGGATGAATTAGGGGGAGTTGATGAAAATGTCCAACGGAAACTAGAGGAG GTTCGCAGAAGGCTACAGCATGGTATGGGGGATCGCCTTGCAGAGTCTCTT
genomic: TGGATGAATTAGGGGGAGTTGATGAAAATGTCCAACGGAAACTAGAGGAGgtacgtactt ... atgttttcagGTTCGCAGAAGGCTACAGCATGGTATGGGGGATCGCCTTGCAGAGTCTCTT
gcagtttagttatttgtgcgacgtgctaaattccatttgcctttcatgttttcagGTTCGCAGAAGGCTACAGCATGGTATGGGGGATCGCCTTGCAGAGTCTCTTCTCACCACTAACTCTACCATAGCATCTGAATATCTCACTCCTGATGAGA
tgctaaa putative branch site (score: 2)
cctttcatgttttc putative PPT
ttagttattt TA-rich tract