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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagcgcatctagcggagtgcccactgtctcgttggtctatttatagtggtaaccactatttaagagattttaccctcttgcctgaatcgcgaattggtgcagAATACATCAGCAATGCGATCTGCGTCGACACAGTATACCTTGTTACTGGTGTGAATTGTCTCGCATTTCTAATTCGATTCAATCGCAATTCGGTGATGCA

Basic information

species Physcomitrella patens
transcript PP1S99_13V6.3
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|100446174|gb|CJ970473.1|CJ970473
EST:     TTGCGACACATCGCTTCATGTCTGCAAGCTGCCTAGCACGTGTTGCGAAG                         AATACATCAGCAATGCGATCTGCGTCGACACAGTATACCTTGTTACTGGTG
genomic: TTGCGACACATCGCTTCATGTCTGCAAGCTGCCTAGCACGTGTTGCGAAGgtgagcgcat ... attggtgcagAATACATCAGCAATGCGATCTGCGTCGACACAGTATACCTTGTTACTGGTG
EST: gi|100390898|gb|BY989381.1|BY989381
EST:     TTGCGACACATCGCTTCATGTCTGCAAGCTGCCTAGCACGTGTTGCGAAG                         AATACATCAGCAATGCGATCTGCGTCGACACAGTATACCTTGTTACTGGTG
genomic: TTGCGACACATCGCTTCATGTCTGCAAGCTGCCTAGCACGTGTTGCGAAGgtgagcgcat ... attggtgcagAATACATCAGCAATGCGATCTGCGTCGACACAGTATACCTTGTTACTGGTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ggtaaccactatttaagagattttaccctcttgcctgaatcgcgaattggtgcagAATACATCAGCAATGCGATCTGCGTCGACACAGTATACCTTGTTACTGGTGTGAATTGTCTCGCATTTCTAATTCGATTCAATCGCAATTCGGTGATGCA
 tggtaac  putative branch site (score: 2)
         tatttaagagatttta  TA-rich tract