1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtacgaaagattaatgggctttcaatgtgatcttgtcggggttgtgattgattcgagggactggagtggcccaattgctgagtgtttttgggcggtgacttgcagGGTGCTGCCCTGCGCAAGCACATTGATGCGACTCTTGGAAGTGGAAACTTACGAGAGGCCGTGCGCCTACCTCCTGGCGAAGATCTCTACGAGTGGTTGG
species | Physcomitrella patens |
transcript | PP1S99_129V6.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GAATCAGCGCACGTTCCGCCCGAAGAAGAGCACTCCTTCAGGGAGTAAG GGTGCTGCCCTGCGCAAGCACATTGATGCGACTCTTGGAAGTGGAAACTTAEST: gi|67575885|gb|BJ948709.1|BJ948709
genomic: GAATCAGCGCACGTTCCGCCCGAAGAAGAGCACTCCTTCAGGGAGTAAGgtacgaaaga ... tgacttgcagGGTGCTGCCCTGCGCAAGCACATTGATGCGACTCTTGGAAGTGGAAACTTA
EST: GAATCAGCGCACGTTCCGCCCGAAGAAGAGCACTCCTTCAGGGAGTAAG GGTGCTGCCCTGCGCAAGCACATTGATGCGACTCTTGGAAGTGGAAACTTAEST: gi|162170894|gb|FC346585.1|FC346585
genomic: GAATCAGCGCACGTTCCGCCCGAAGAAGAGCACTCCTTCAGGGAGTAAGgtacgaaaga ... tgacttgcagGGTGCTGCCCTGCGCAAGCACATTGATGCGACTCTTGGAAGTGGAAACTTA
EST: GAATCAGCGCACGTTCCGCCCGAAGAAGAGCACTCCTTCAGGGAGTAAG GGTGCTGCCCTGCGCAAGCACATTGATGCGACTCTTGGAAGTGGAAACTTAEST: gi|162266887|gb|FC443001.1|FC443001
genomic: GAATCAGCGCACGTTCCGCCCGAAGAAGAGCACTCCTTCAGGGAGTAAGgtacgaaaga ... tgacttgcagGGTGCTGCCCTGCGCAAGCACATTGATGCGACTCTTGGAAGTGGAAACTTA
EST: GAATCAGCGCACGTTCCGCCCGAAGAAGAGCACTCCTTCAGGGAGTAAG GGTGCTGCCCTGCGCAAGCACATTGATGCGACTCTTGGAAGTGGAAACTTAEST: gi|67570910|gb|BJ943734.1|BJ943734
genomic: GAATCAGCGCACGTTCCGCCCGAAGAAGAGCACTCCTTCAGGGAGTAAGgtacgaaaga ... tgacttgcagGGTGCTGCCCTGCGCAAGCACATTGATGCGACTCTTGGAAGTGGAAACTTA
EST: GAATCAGCGCACGTTCCGCCCGAAGAAGAGCACTCCTTCAGGGAGTAAG GGTGCTGCCCTGCGCAAGCACATTGATGCGACTCTTGGAAGTGGAAACTTAEST: gi|162230786|gb|FC406417.1|FC406417
genomic: GAATCAGCGCACGTTCCGCCCGAAGAAGAGCACTCCTTCAGGGAGTAAGgtacgaaaga ... tgacttgcagGGTGCTGCCCTGCGCAAGCACATTGATGCGACTCTTGGAAGTGGAAACTTA
EST: GAATCAGCGCACGTTCCGCCCGAAGAAGAGCACTCCTTCAGGGAGTAAG GGTGCTGCCCTGCGCAAGCACATTGATGCGACTCTTGGAAGTGGAAACTTAEST: gi|162240620|gb|FC419163.1|FC419163
genomic: GAATCAGCGCACGTTCCGCCCGAAGAAGAGCACTCCTTCAGGGAGTAAGgtacgaaaga ... tgacttgcagGGTGCTGCCCTGCGCAAGCACATTGATGCGACTCTTGGAAGTGGAAACTTA
EST: GGAATCAGCGCACGTTCCGCCCGAAGAAGAGCACTCCTTCAGGGAGTAAG GGTGCTGCCCTGCGCAAGCACATTGATGCGACTCTTGGAAGTGGAAACTTAEST: gi|162215557|gb|FC391649.1|FC391649
genomic: GGAATCAGCGCACGTTCCGCCCGAAGAAGAGCACTCCTTCAGGGAGTAAGgtacgaaaga ... tgacttgcagGGTGCTGCCCTGCGCAAGCACATTGATGCGACTCTTGGAAGTGGAAACTTA
EST: GAATCAGCGCACGTTCCGCCCGAAGAAGAGCACTCCTTCAGGGAGTAAG GGTGCTGCCCTGCGCAAGCACATTGATGCGACTCTTGGAAGTGGAAACTTAEST: gi|18364712|gb|BJ196785.1|BJ196785
genomic: GAATCAGCGCACGTTCCGCCCGAAGAAGAGCACTCCTTCAGGGAGTAAGgtacgaaaga ... tgacttgcagGGTGCTGCCCTGCGCAAGCACATTGATGCGACTCTTGGAAGTGGAAACTTA
EST: GAATCAGCGCACGTTCCGCCCGAAGAAGAGCACTCCTTCAGGGAGTAAG GGTGCTGCCCTGCGCAAGCACATTGATGCGACTCTTGGAAGTGGAAACTTA
genomic: GAATCAGCGCACGTTCCGCCCGAAGAAGAGCACTCCTTCAGGGAGTAAGgtacgaaaga ... tgacttgcagGGTGCTGCCCTGCGCAAGCACATTGATGCGACTCTTGGAAGTGGAAACTTA
attcgagggactggagtggcccaattgctgagtgtttttgggcggtgacttgcagGGTGCTGCCCTGCGCAAGCACATTGATGCGACTCTTGGAAGTGGAAACTTACGAGAGGCCGTGCGCCTACCTCCTGGCGAAGATCTCTACGAGTGGTTGG
gattgat putative branch site (score: 28)
tgttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacgaaagattaatgggctttcaatgtgatcttgtcggggttgtgattgattcgagggactggagtggcccaattgctgagtgtttttgggcggtgacttgcagGGTGCTGCCCTGCGCAAGCACATTGATGCGACTCTTGGAAGTGGAAACTTACGAGAGGCCGTGCGCCTACCTCCTGGCGAAGATCTCTACGAGTGGTTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA