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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAGTGGATGGTGTGAATGGCACAGGCGAGGATGGTGAAAAGAAAATCGTTATGGTGTTAGCAGCAACAAACTTCCCTTGGGACATTGACGAAGCACTCAGgtttggagcacatattgaaaggctgatgcatctgatagatggaatattttttaggttacatttttgtcagttttctagggctgtttcttgtgtgtgacgaaaaggaagagaagtacttctactaaacgaaggttactaaataaagggtcgaatgatatgatatcttggtttctttttgatgcag

Basic information

species Physcomitrella patens
transcript PP1S99_113V6.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S99_113V6.1 (Physcomitrella patens), 5'ss of exon 6
lower sequence: EFJ36428 (Selaginella moellendorffii), 5'ss of exon 6
AAGTGGATGGTGTGAATGGCACAGGCGAGGATGGTGAAAAGAAAATCGTTATGGTGTTAGCAGCAACAAACTTCCCTTGGGACATTGACGAAGCACTCAGgtttggagcacatattgaaaggctgatgcatctgatagatggaatattttttaggttacatttttgtcagttttctagggctgtttcttgtgtgtgacgaaaaggaagagaagtacttctactaaacgaaggttactaaataaagggtcgaatgatatgatatcttggtttctttttgatgcag
|| | ||||| || |||  ||   | |||||||| || ||||| || || |||||  | ||||| ||||||||||| |||||||||||||| || |||||||         |||||       ||||         || |    |  ||||||  |  ||   ||| |||                                                                                                                  
AAATTGATGGAGTAAATAACAGCAGTGAGGATGGCGAGAAGAAGATTGTCATGGTACTGGCAGCTACAAACTTCCCGTGGGACATTGACGAGGCTCTCAGgtg--------atatt-------tgatatcctctccagtt----ttgtttttacataccaccattggcag------------------------------------------------------------------------------------------------------------------