1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...aaaaatttcgaatttctcaatcctaggttcaaactggcattcctagttatcagggatgattcttcttgctgctgatccctctctcggttaggttctgcagAAATGAAGAAAACGAGTGGGTGTATGAAACCTGGCAAGGGCTCGGCCGGTTTTTGAAATCTCAATGTAGTTGTGCTGATGTATACGCCCTCAGCGGAAAC
species | Physcomitrella patens |
transcript | PP1S99_110V6.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: TCTCTTGTAGTAACCAACCCTCCATGGGGAGAACGTCTCATCGACTCGAG GEST: gi|162155189|gb|FC331685.1|FC331685
genomic: TCTCTTGTAGTAACCAACCCTCCATGGGGAGAACGTCTCATCGACTCGAGgtttgcgcta ... ggttctgcag-
EST: TCTCTTGTAGTAACCAACCCTCCATGGGGAGAACGTCTCATCGACTCGAG GEST: gi|162155189|gb|FC331685.1|FC331685
genomic: TCTCTTGTAGTAACCAACCCTCCATGGGGAGAACGTCTCATCGACTCGAGgtttgcgcta ... ggttctgcag-
EST: TCTCTTGTAGTAACCAACCCTCCATGGGGAGAACGTCTCATCGACTCGAG GEST: gi|162155189|gb|FC331685.1|FC331685
genomic: TCTCTTGTAGTAACCAACCCTCCATGGGGAGAACGTCTCATCGACTCGAGgtttgcgcta ... ggttctgcag-
EST: TCTCTTGTAGTAACCAACCCTCCATGGGGAGAACGTCTCATCGACTCGAG GEST: gi|162155189|gb|FC331685.1|FC331685
genomic: TCTCTTGTAGTAACCAACCCTCCATGGGGAGAACGTCTCATCGACTCGAGgtttgcgcta ... ggttctgcag-
EST: TCTCTTGTAGTAACCAACCCTCCATGGGGAGAACGTCTCATCGACTCGAG GEST: gi|162155189|gb|FC331685.1|FC331685
genomic: TCTCTTGTAGTAACCAACCCTCCATGGGGAGAACGTCTCATCGACTCGAGgtttgcgcta ... ggttctgcag-
EST: TCTCTTGTAGTAACCAACCCTCCATGGGGAGAACGTCTCATCGACTCGAG GEST: gi|162155189|gb|FC331685.1|FC331685
genomic: TCTCTTGTAGTAACCAACCCTCCATGGGGAGAACGTCTCATCGACTCGAGgtttgcgcta ... ggttctgcag-
EST: TCTCTTGTAGTAACCAACCCTCCATGGGGAGAACGTCTCATCGACTCGAG GEST: gi|162155189|gb|FC331685.1|FC331685
genomic: TCTCTTGTAGTAACCAACCCTCCATGGGGAGAACGTCTCATCGACTCGAGgtttgcgcta ... ggttctgcag-
EST: TCTCTTGTAGTAACCAACCCTCCATGGGGAGAACGTCTCATCGACTCGAG G
genomic: TCTCTTGTAGTAACCAACCCTCCATGGGGAGAACGTCTCATCGACTCGAGgtttgcgcta ... ggttctgcag-
gttatcagggatgattcttcttgctgctgatccctctctcggttaggttctgcagAAATGAAGAAAACGAGTGGGTGTATGAAACCTGGCAAGGGCTCGGCCGGTTTTTGAAATCTCAATGTAGTTGTGCTGATGTATACGCCCTCAGCGGAAAC
tgctgat putative branch site (score: 3)
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aaaaatttcgaatttctcaatcctaggttcaaactggcattcctagttatcagggatgattcttcttgctgctgatccctctctcggttaggttctgcagAAATGAAGAAAACGAGTGGGTGTATGAAACCTGGCAAGGGCTCGGCCGGTTTTTGAAATCTCAATGTAGTTGTGCTGATGTATACGCCCTCAGCGGAAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT