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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...taaaatgaatcaaatcgagttctgcttctttattttattttattttattttgaaatttgtgaattggagcttgaggtttgtagcgatgcgtgtgatgcagAAGGTCGGAGAGGGGCTGAACACTTCGTATGCCGCGCATGGTTTTGTTGATGTTGATTTTTGTGCAACAGTTTGCGTGTCGGGGCGTTTATTCCAGCTAG

Basic information

species Physcomitrella patens
transcript PP1S98_9V6.3
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|100356011|gb|BY946151.1|BY946151
EST:     TCGTTGTGATCCTCCTGTATTGCAGTTGACGTTGCGTTTTTGTCCACAAG                         AAGGTCGGAGAGGGGCTGAACACTTCGTATGCCGCGCATGGTTTTGTTGAT
genomic: TCGTTGTGATCCTCCTGTATTGCAGTTGACGTTGCGTTTTTGTCCACAAGgtaataagct ... tgtgatgcagAAGGTCGGAGAGGGGCTGAACACTTCGTATGCCGCGCATGGTTTTGTTGAT
EST: gi|100419314|gb|BY993425.1|BY993425
EST:     TCGTTGTGATCCTCCTGTATTGCAGTTGACGTTGCGTTTTTGTCCACAAG                         AAGGTCGGAGAGGGGCTGAACACTTCGTATGCCGCGCATGGTTTTGTTGAT
genomic: TCGTTGTGATCCTCCTGTATTGCAGTTGACGTTGCGTTTTTGTCCACAAGgtaataagct ... tgtgatgcagAAGGTCGGAGAGGGGCTGAACACTTCGTATGCCGCGCATGGTTTTGTTGAT
EST: gi|162203547|gb|FC380463.1|FC380463
EST:     TCGTTGTGATCCTCCTGTATTGCAGTTGACGTTGCGTTTTTGTCCACAAG                         AAGGTCGGAGAGGGGCTGAACACTTCGTATGCCGCGCATGGTTTTGTTGAT
genomic: TCGTTGTGATCCTCCTGTATTGCAGTTGACGTTGCGTTTTTGTCCACAAGgtaataagct ... tgtgatgcagAAGGTCGGAGAGGGGCTGAACACTTCGTATGCCGCGCATGGTTTTGTTGAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tattttgaaatttgtgaattggagcttgaggtttgtagcgatgcgtgtgatgcagAAGGTCGGAGAGGGGCTGAACACTTCGTATGCCGCGCATGGTTTTGTTGATGTTGATTTTTGTGCAACAGTTTGCGTGTCGGGGCGTTTATTCCAGCTAG
     tgaaattt  TA-rich tract