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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...agtaggttgaagcatttctacgtgaataccaaggaaacgtcagaaagttggattctatcatgcaacgaagcaggcttatcctatttacttgtgtgattagGGACCGAGTGCATGGCCAAGAAGTGAGCGATCCATGGGATTGAGGACGACTAATTCTTATCGAGAACGGGCTCCACAAAGGGTTATATTAGGGCTTGAAT

Basic information

species Physcomitrella patens
transcript PP1S98_98V6.3
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18347734|gb|BJ179781.1|BJ179781
EST:     AACGCGAAGAGGACGCTTATGCCCACATCTTCCAGTTCGAGATCGTTCCG                         GGACCGAGTGCATGGCCAAGAAGTGAGCGATCCATGGGATTGAGGACGACT
genomic: AACGCGAAGAGGACGCTTATGCCCACATCTTCCAGTTCGAGATCGTTCCGgtgagtgagc ... gtgtgattagGGACCGAGTGCATGGCCAAGAAGTGAGCGATCCATGGGATTGAGGACGACT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agttggattctatcatgcaacgaagcaggcttatcctatttacttgtgtgattagGGACCGAGTGCATGGCCAAGAAGTGAGCGATCCATGGGATTGAGGACGACTAATTCTTATCGAGAACGGGCTCCACAAAGGGTTATATTAGGGCTTGAAT
                                    tatttactt  TA-rich tract