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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ttgtatcttattttcttctgaagtgatcgtagtgcaagaagtcttctcaaatgtgtgatgacatccccctaattctctatctgccaaacgtgacatgcagGCAAAGACTGCCTTTCCTGGTTTAGGGTCTCCGATTACTCATGTAGATGTCACATACGATGGGAAATGGGTGTTAGCCACCACAGACACGTACTTGATTC

Basic information

species Physcomitrella patens
transcript PP1S98_86V6.1
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162159372|gb|FC334653.1|FC334653
EST:     GATCTAAAGATGGCAAAGTGAGACTGTACGGCACCACCAGCATGAGAATG                         GCAAAGACTGCCTTTCCTGGTTTAGGGTCTCCGATTACTCATGTAGATGTC
genomic: GATCTAAAGATGGCAAAGTGAGACTGTACGGCACCACCAGCATGAGAATGgtaaacattc ... tgacatgcagGCAAAGACTGCCTTTCCTGGTTTAGGGTCTCCGATTACTCATGTAGATGTC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctcaaatgtgtgatgacatccccctaattctctatctgccaaacgtgacatgcagGCAAAGACTGCCTTTCCTGGTTTAGGGTCTCCGATTACTCATGTAGATGTCACATACGATGGGAAATGGGTGTTAGCCACCACAGACACGTACTTGATTC
                     ccctaat  putative branch site (score: 3)
                        taattct  TA-rich tract