1 5' 3' | 2 5' 3' | 3 5' 3' |
gtacatacactgatcaaacttggcgtgaactagatactagttcaacttttctgctttctctcaacttacgtaattgtctttgttctatttcaagtcttttttgcggaattgttttgcgcagttgtttcaccccatgcttcttaattgaaaaactgttataattgcagGCTGACATGAACAATCTTGGTGATTACGACTGGATGGCGGATTTGAGCATGTTCGAAGAGCAGATGTACGCGGCTGGGTCGTTCCATGAAGTACCCCAAT
species | Physcomitrella patens |
transcript | PP1S98_84V6.2 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TACCAGAATTGGCGGAAGGTTATCACATAGGTGATATCGGTTCCTCCAAG GCTGACATGAACAATCTTGGTGATTACGACTGGATGGCGGATTTGAGCATGEST: gi|37827665|gb|BJ585677.1|BJ585677
genomic: TACCAGAATTGGCGGAAGGTTATCACATAGGTGATATCGGTTCCTCCAAGgtacatacac ... ataattgcagGCTGACATGAACAATCTTGGTGATTACGACTGGATGGCGGATTTGAGCATG
EST: TACCAGAATTGGCGGAAGGTTATCACATAGGTGATATCGGTTCCTCCAAG GCTGACATGAACAATCTTGGTGATTACGACTGGATGGCGGATTTGAGCATGEST: gi|208355263|gb|DC949799.1|DC949799
genomic: TACCAGAATTGGCGGAAGGTTATCACATAGGTGATATCGGTTCCTCCAAGgtacatacac ... ataattgcagGCTGACATGAACAATCTTGGTGATTACGACTGGATGGCGGATTTGAGCATG
EST: TACCAGAATTGGCGGAAGGTTATCACATAGGTGATATCGGTTCCTCCAAG GCTGACATGAACAATCTTGGTGATTACGACTGGATGGCGGATTTGAGCATGEST: gi|37840903|gb|BJ598911.1|BJ598911
genomic: TACCAGAATTGGCGGAAGGTTATCACATAGGTGATATCGGTTCCTCCAAGgtacatacac ... ataattgcagGCTGACATGAACAATCTTGGTGATTACGACTGGATGGCGGATTTGAGCATG
EST: TACCAGAATTGGCGGAAGGTTATCACATAGGTGATATCGGTTCCTCCAAG GCTGACATGAACAATCTTGGTGATTACGACTGGATGGCGGATTTGAGCATGEST: gi|162229734|gb|FC404018.1|FC404018
genomic: TACCAGAATTGGCGGAAGGTTATCACATAGGTGATATCGGTTCCTCCAAGgtacatacac ... ataattgcagGCTGACATGAACAATCTTGGTGATTACGACTGGATGGCGGATTTGAGCATG
EST: TACCAGAATTGGCGGAAGGTTATCACATAGGTGATATCGGTTCCTCCAAG GCTGACATGAACAATCTTGGTGATTACGACTGGATGGCGGATTTGAGCATGEST: gi|18338873|gb|BJ170899.1|BJ170899
genomic: TACCAGAATTGGCGGAAGGTTATCACATAGGTGATATCGGTTCCTCCAAGgtacatacac ... ataattgcagGCTGACATGAACAATCTTGGTGATTACGACTGGATGGCGGATTTGAGCATG
EST: TACCAGAATTGGCGGAAGGTTATCACATAGGTGATATCGGTTCCTCCAAG GCTGACATGAACAATCTTGGTGATTACGACTGGATGGCGGATTTGAGCATGEST: gi|208382037|gb|DC928481.1|DC928481
genomic: TACCAGAATTGGCGGAAGGTTATCACATAGGTGATATCGGTTCCTCCAAGgtacatacac ... ataattgcagGCTGACATGAACAATCTTGGTGATTACGACTGGATGGCGGATTTGAGCATG
EST: TACCAGAATTGGCGGAAGGTTATCACATAGGTGATATCGGTTCCTCCAAG GCTGACATGAACAATCTTGGTGATTACGACTGGATGGCGGATTTGAGCATGEST: gi|208385375|gb|DC956615.1|DC956615
genomic: TACCAGAATTGGCGGAAGGTTATCACATAGGTGATATCGGTTCCTCCAAGgtacatacac ... ataattgcagGCTGACATGAACAATCTTGGTGATTACGACTGGATGGCGGATTTGAGCATG
EST: TACCAGAATTGGCGGAAGGTTATCACATAGGTGATATCGGTTCCTCCAAG GCTGACATGAACAATCTTGGTGATTACGACTGGATGGCGGATTTGAGCATGEST: gi|67692483|gb|BJ952716.1|BJ952716
genomic: TACCAGAATTGGCGGAAGGTTATCACATAGGTGATATCGGTTCCTCCAAGgtacatacac ... ataattgcagGCTGACATGAACAATCTTGGTGATTACGACTGGATGGCGGATTTGAGCATG
EST: TACCAGAATTGGCGGAAGGTTATCACATAGGTGATATCGGTTCCTCCAAG GCTGACATGAACAATCTTGGTGATTACGACTGGATGGCGGATTTGAGCATGEST: gi|162233740|gb|FC410006.1|FC410006
genomic: TACCAGAATTGGCGGAAGGTTATCACATAGGTGATATCGGTTCCTCCAAGgtacatacac ... ataattgcagGCTGACATGAACAATCTTGGTGATTACGACTGGATGGCGGATTTGAGCATG
EST: TACCAGAATTGGCGGAAGGTTATCACATAGGTGATATCGGTTCCTCCAAG GCTGACATGAACAATCTTGGTGATTACGACTGGATGGCGGATTTGAGCATGEST: gi|208384366|gb|DC928117.1|DC928117
genomic: TACCAGAATTGGCGGAAGGTTATCACATAGGTGATATCGGTTCCTCCAAGgtacatacac ... ataattgcagGCTGACATGAACAATCTTGGTGATTACGACTGGATGGCGGATTTGAGCATG
EST: TACCAGAATTGGCGGAAGGTTATCACATAGGTGATATCGGTTCCTCCAAG GCTGACATGAACAATCTTGGTGATTACGACTGGATGGCGGATTTGAGCATGEST: gi|162232467|gb|FC408862.1|FC408862
genomic: TACCAGAATTGGCGGAAGGTTATCACATAGGTGATATCGGTTCCTCCAAGgtacatacac ... ataattgcagGCTGACATGAACAATCTTGGTGATTACGACTGGATGGCGGATTTGAGCATG
EST: TACCAGAATTGGCGGAAGGTTATCACATAGGTGATATCGGTTCCTCCAAG GCTGACATGAACAATCTTGGTGATTACGACTGGATGGCGGATTTGAGCATGEST: gi|162245598|gb|FC424126.1|FC424126
genomic: TACCAGAATTGGCGGAAGGTTATCACATAGGTGATATCGGTTCCTCCAAGgtacatacac ... ataattgcagGCTGACATGAACAATCTTGGTGATTACGACTGGATGGCGGATTTGAGCATG
EST: TACCAGAATTGGCGGAAGGTTATCACATAGGTGATATCGGTTCCTCCAAG GCTGACATGAACAATCTTGGTGATTACGACTGGATGGCGGATTTGAGCATGEST: gi|208357901|gb|DC918649.1|DC918649
genomic: TACCAGAATTGGCGGAAGGTTATCACATAGGTGATATCGGTTCCTCCAAGgtacatacac ... ataattgcagGCTGACATGAACAATCTTGGTGATTACGACTGGATGGCGGATTTGAGCATG
EST: TACCAGAATTGGCGGAAGGTTATCACATAGGTGATATCGGTTCCTCCAAG GCTGACATGAACAATCTTGGTGATTACGACTGGATGGCGGATTTGAGCATGEST: gi|18363745|gb|BJ195817.1|BJ195817
genomic: TACCAGAATTGGCGGAAGGTTATCACATAGGTGATATCGGTTCCTCCAAGgtacatacac ... ataattgcagGCTGACATGAACAATCTTGGTGATTACGACTGGATGGCGGATTTGAGCATG
EST: TACCAGAATTGGCGGAAGGTTATCACATAGGTGATATCGGTTCCTCCAAG GCTGACATGAACAATCTTGGTGATTACGACTGGATGGCGGATTTGAGCATGEST: gi|67694456|gb|BJ954689.1|BJ954689
genomic: TACCAGAATTGGCGGAAGGTTATCACATAGGTGATATCGGTTCCTCCAAGgtacatacac ... ataattgcagGCTGACATGAACAATCTTGGTGATTACGACTGGATGGCGGATTTGAGCATG
EST: TACCAGAATTGGCGGAAGGTTATCACATAGGTGATATCGGTTCCTCCAAG GCTGACATGAACAATCTTGGTGATTACGACTGGATGGCGGATTTGAGCATGEST: gi|18336726|gb|BJ168749.1|BJ168749
genomic: TACCAGAATTGGCGGAAGGTTATCACATAGGTGATATCGGTTCCTCCAAGgtacatacac ... ataattgcagGCTGACATGAACAATCTTGGTGATTACGACTGGATGGCGGATTTGAGCATG
EST: TACCAGAATTGGCGGAAGGTTATCACATAGGTGATATCGGTTCCTCCAAG GCTGACATGAACAATCTTGGTGATTACGACTGGATGGCGGATTTGAGCATGEST: gi|162225033|gb|FC401449.1|FC401449
genomic: TACCAGAATTGGCGGAAGGTTATCACATAGGTGATATCGGTTCCTCCAAGgtacatacac ... ataattgcagGCTGACATGAACAATCTTGGTGATTACGACTGGATGGCGGATTTGAGCATG
EST: TACCAGAATTGGCGGAAGGTTATCACATAGGTGATATCGGTTCCTCCAAG GCTGACATGAACAATCTTGGTGATTACGACTGGATGGCGGATTTGAGCATGEST: gi|162232466|gb|FC408861.1|FC408861
genomic: TACCAGAATTGGCGGAAGGTTATCACATAGGTGATATCGGTTCCTCCAAGgtacatacac ... ataattgcagGCTGACATGAACAATCTTGGTGATTACGACTGGATGGCGGATTTGAGCATG
EST: TACCAGAATTGGCGGAAGGTTATCACATAGGTGATATCGGTTCCTCCAAG GCTGACATGAACAATCTTGGTGATTACGACTGGATGGCGGATTTGAGCATG
genomic: TACCAGAATTGGCGGAAGGTTATCACATAGGTGATATCGGTTCCTCCAAGgtacatacac ... ataattgcagGCTGACATGAACAATCTTGGTGATTACGACTGGATGGCGGATTTGAGCATG
tttgcgcagttgtttcaccccatgcttcttaattgaaaaactgttataattgcagGCTGACATGAACAATCTTGGTGATTACGACTGGATGGCGGATTTGAGCATGTTCGAAGAGCAGATGTACGCGGCTGGGTCGTTCCATGAAGTACCCCAAT
tcttaat putative branch site (score: 4)
ttaattgaaaaactgt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacatacactgatcaaacttggcgtgaactagatactagttcaacttttctgctttctctcaacttacgtaattgtctttgttctatttcaagtcttttttgcggaattgttttgcgcagttgtttcaccccatgcttcttaattgaaaaactgttataattgcagGCTGACATGAACAATCTTGGTGATTACGACTGGATGGCGGATTTGAGCATGTTCGAAGAGCAGATGTACGCGGCTGGGTCGTTCCATGAAGTACCCCAAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG