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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCGGTCACCTCACATCACAGAATATTATGGGTCTTACTTGCACGCAACGAAATTATGGATTGTTATGGAATACATGGCAGGTGGTTCTGTATTAGACTTGgtgagttttaatgaataccttgagctacttctgttgcttaaagagcttcgcacttgttttttgtgcaacattttttgaataacttctctattgacaacct...

Basic information

species Physcomitrella patens
transcript PP1S98_82V6.2
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S98_82V6.1 (Physcomitrella patens), 5'ss of exon 4
lower sequence: GRMZM2G027756_T01 (Zea mays), 5'ss of exon 4
CCGGTCACCTCACATCACAGAATATTATGGGTCTTACTTGCACGCAACGAAATTATGGATTGTTATGGAATACATGGCAGGTGGTTCTGTATTAGACTTGgtgagttttaatgaataccttgagctacttctgttgcttaaagagcttcgcac----ttgttttttgtgcaac-attttttgaataacttctctattgacaacct---------------------------------------------------------------------
|||||  ||  | || || || ||||| || |||||  | |||   || ||||| ||||| || |||||||||||||| |||||||||||    ||  | ||  |||||   | ||| | |     | ||  | | |||| |  | ||   ||      | |   |||| |   | |  |  | | ||   || ||   || |                                                                       
CCGGTGCCCATATATTACCGATTATTACGGCTCTTATCTTCACCAGACTAAATTGTGGATAGTAATGGAATACATGGCTGGTGGTTCTGTTGCTGATCTTgtatgtttt---gtatatcctttctcaatt--gatccttataatgtttaatacaatgcagataactgtgaagttagtgctccattgaccattccatcatcacctgtcaaacaccattataaactacttgatgataattgatgttgttcgttcatttccatcattccatgtgcag

upper sequence: PP1S98_82V6.1 (Physcomitrella patens), 5'ss of exon 4
lower sequence: EFJ32910 (Selaginella moellendorffii), 5'ss of exon 4
CCGGTCACCTCACATCACAGAATATTATGGGTCTTACTTGCACGCAACGAAATTATGGATTGTTATGGAATACATGGCAGGTGGTTCTGTATTAGACTTGgtgagttttaatgaataccttgagctacttctgttgcttaaagagcttcgcacttgttttttgtgcaacattttttgaataacttctctattgacaacct
|||||||||  |||| || || |||||||| |||| | |||| | ||| ||||||||||| |||||||| |||||||| ||||| |||||||  ||||||||||||||   ||      || ||     |||  ||   |||||         ||||||| ||   |                                 
CCGGTCACCATACATTACGGAGTATTATGGATCTTTCCTGCATGGAACAAAATTATGGATCGTTATGGAGTACATGGCTGGTGGATCTGTATCGGACTTGgtgagtttggctgc---tgtttag-----tctagtgacgaaaga---------ttgttttctggatacag------------------------------

upper sequence: PP1S98_82V6.1 (Physcomitrella patens), 5'ss of exon 4
lower sequence: EFJ15774 (Selaginella moellendorffii), 5'ss of exon 4
CCGGTCACCTCACATCACAGAATATTATGGGTCTTACTTGCACGCAACGAAATTATGGATTGTTATGGAATACATGGCAGGTGGTTCTGTATTAGACTTGgtgagttttaatgaataccttgagctacttctgttgcttaaagagcttcgcacttgttttttg--tgcaacattttttgaataacttctctattgacaacct
||| |||||  |||| || || |||||||| |||| | |||| | ||| ||||||||||| |||||||| |||||||| ||||| |||||||  |||||||||||||    ||      || ||     |||  ||   |||||         ||| ||| ||  ||||                                 
CCGATCACCATACATTACGGAGTATTATGGATCTTTCCTGCATGGAACAAAATTATGGATCGTTATGGAGTACATGGCTGGTGGATCTGTATCGGACTTGgtgagttaggctgc---tgtttag-----tctagtgacgaaaga---------ttgctttctggatgcag--------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162256992|gb|FC432731.1|FC432731
EST:     AATTATGGATTGTTATGGAATACATGGCAGGTGGTTCTGTATTAGACTTG                         CTTGAGACCGGACCACCACTCGATGAAGTTTCTATAGCATGCATTTTACGG
genomic: AATTATGGATTGTTATGGAATACATGGCAGGTGGTTCTGTATTAGACTTGgtgagtttta ... ggtcttacagCTTGAGACCGGACCACCACTCGATGAAGTTTCTATAGCATGCATTTTACGG