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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCGCAATTGTGCACCTGCTGCGTTGCACGCACGCGCTCCATCGCTGCCTTGCCGCAGTACTCACGCCTCCCTTGAACCTTCAGgtacttccccccttttacctcttcgtcgccccgtccccaacctgcgcttcaaaatgacatgagaatcgcgtcttatggtgccttggcttgattttggtgt...

Basic information

species Physcomitrella patens
transcript PP1S98_65V6.2
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162223113|gb|FC399692.1|FC399692
EST:     CGCTCCATCGCTGCCTTGCCGCAGTACTCACGCCTCCCTTGAACCTTCAG                         TGTTTGTTTTGTGCATCAGAATGGCGTCTGTATCAGATGACTTGATCTGGT
genomic: CGCTCCATCGCTGCCTTGCCGCAGTACTCACGCCTCCCTTGAACCTTCAGgtacttcccc ... tctggagaagTGTTTGTTTTGTGCATCAGAATGGCGTCTGTATCAGATGACTTGATCTGGT
EST: gi|162223112|gb|FC399691.1|FC399691
EST:     CGCTCCATCGCTGCCTTGCCGCAGTACTCACGCCTCCCTTGAACCTTCAG                         TGTTTGTTTTGTGCATCAGAATGGCGTCTGTATCAGATGACTTGATCTGGT
genomic: CGCTCCATCGCTGCCTTGCCGCAGTACTCACGCCTCCCTTGAACCTTCAGgtacttcccc ... tctggagaagTGTTTGTTTTGTGCATCAGAATGGCGTCTGTATCAGATGACTTGATCTGGT
EST: gi|18340983|gb|BJ173015.1|BJ173015
EST:     CGCTCCATCGCTGCCTTGCCGCAGTACTCACGCCTCCCTTGAACCTTCAG                         TGTTTGTTTTGTGCATCAGAATGGCGTCTGTATCAGATGACTTGATCTGGT
genomic: CGCTCCATCGCTGCCTTGCCGCAGTACTCACGCCTCCCTTGAACCTTCAGgtacttcccc ... tctggagaagTGTTTGTTTTGTGCATCAGAATGGCGTCTGTATCAGATGACTTGATCTGGT