1 5' 3' | 2 5' 3' | 3 5' 3' |
gtaataaccgtatatttgatgacttaatgttaagtgtttttcgttcactgacggtgaatcatcacttgacagtctttctcctacgctgattaaaaaaagtattacttcatggaattgtttcgttgcagtttactgacatgtatgagattgtttgtgggtctagGTCGCCACCAATGATTACAGGGCCGATTTGAAGTCTGCCGCTTTGGCCAGATTGGCTGCAGTTCACAAGAGCTTGCGTGTGGCTAAGGCTGGTGTCAGCA
species | Physcomitrella patens |
transcript | PP1S98_65V6.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: CCCTCTTGAAGAAGGATTTTCGCAAAATGGCTAAGACTGTAGTCAACCAG GTCGCCACCAATGATTACAGGGCCGATTTGAAGTCTGCCGCTTTGGCCAGAEST: gi|162277981|gb|FC454112.1|FC454112
genomic: CCCTCTTGAAGAAGGATTTTCGCAAAATGGCTAAGACTGTAGTCAACCAGgtaataaccg ... gtgggtctagGTCGCCACCAATGATTACAGGGCCGATTTGAAGTCTGCCGCTTTGGCCAGA
EST: CCCTCTTGAAGAAGGATTTTCGCAAAATGGCTAAGACTGTAGTCAACCAG GTCGCCACCAATGATTACAGGGCCGATTTGAAGTCTGCCGCTTTGGCCAGAEST: gi|162266208|gb|FC441737.1|FC441737
genomic: CCCTCTTGAAGAAGGATTTTCGCAAAATGGCTAAGACTGTAGTCAACCAGgtaataaccg ... gtgggtctagGTCGCCACCAATGATTACAGGGCCGATTTGAAGTCTGCCGCTTTGGCCAGA
EST: CCCTCTTGAAGAAGGATTTTCGCAAAATGGCTAAGACTGTAGTCAACCAG GTCGCCACCAATGATTACAGGGCCGATTTGAAGTCTGCCGCTTTGGCCAGAEST: gi|18359055|gb|BJ191115.1|BJ191115
genomic: CCCTCTTGAAGAAGGATTTTCGCAAAATGGCTAAGACTGTAGTCAACCAGgtaataaccg ... gtgggtctagGTCGCCACCAATGATTACAGGGCCGATTTGAAGTCTGCCGCTTTGGCCAGA
EST: CCCTCTTGAAGAAGGATTTTCGCAAAATGGCTAAGACTGTAGTCAACCAG GTCGCCACCAATGATTACAGGGCCGATTTGAAGTCTGCCGCTTTGGCCAGAEST: gi|162219281|gb|FC395277.1|FC395277
genomic: CCCTCTTGAAGAAGGATTTTCGCAAAATGGCTAAGACTGTAGTCAACCAGgtaataaccg ... gtgggtctagGTCGCCACCAATGATTACAGGGCCGATTTGAAGTCTGCCGCTTTGGCCAGA
EST: CCCTCTTGAAGAAGGATTTTCGCAAAATGGCTAAGACTGTAGTCAACCAG GTCGCCACCAATGATTACAGGGCCGATTTGAAGTCTGCCGCTTTGGCCAGAEST: gi|162276139|gb|FC452831.1|FC452831
genomic: CCCTCTTGAAGAAGGATTTTCGCAAAATGGCTAAGACTGTAGTCAACCAGgtaataaccg ... gtgggtctagGTCGCCACCAATGATTACAGGGCCGATTTGAAGTCTGCCGCTTTGGCCAGA
EST: CCCTCTTGAAGAAGGATTTTCGCAAAATGGCTAAGACTGTAGTCAACCAG GTCGCCACCAATGATTACAGGGCCGATTTGAAGTCTGCCGCTTTGGCCAGAEST: gi|162266846|gb|FC441738.1|FC441738
genomic: CCCTCTTGAAGAAGGATTTTCGCAAAATGGCTAAGACTGTAGTCAACCAGgtaataaccg ... gtgggtctagGTCGCCACCAATGATTACAGGGCCGATTTGAAGTCTGCCGCTTTGGCCAGA
EST: CCCTCTTGAAGAAGGATTTTCGCAAAATGGCTAAGACTGTAGTCAACCAG GTCGCCACCAATGATTACAGGGCCGATTTGAAGTCTGCCGCTTTGGCCAGAEST: gi|18331139|gb|BJ163146.1|BJ163146
genomic: CCCTCTTGAAGAAGGATTTTCGCAAAATGGCTAAGACTGTAGTCAACCAGgtaataaccg ... gtgggtctagGTCGCCACCAATGATTACAGGGCCGATTTGAAGTCTGCCGCTTTGGCCAGA
EST: CCCTCTTGAAGAAGGATTTTCGCAAAATGGCTAAGACTGTAGTCAACCAG GTCGCCACCAATGATTACAGGGCCGATTTGAAGTCTGCCGCTTTGGCCAGAEST: gi|162276138|gb|FC452830.1|FC452830
genomic: CCCTCTTGAAGAAGGATTTTCGCAAAATGGCTAAGACTGTAGTCAACCAGgtaataaccg ... gtgggtctagGTCGCCACCAATGATTACAGGGCCGATTTGAAGTCTGCCGCTTTGGCCAGA
EST: CCCTCTTGAAGAAGGATTTTCGCAAAATGGCTAAGACTGTAGTCAACCAG GTCGCCACCAATGATTACAGGGCCGATTTGAAGTCTGCCGCTTTGGCCAGAEST: gi|162209251|gb|FC385171.1|FC385171
genomic: CCCTCTTGAAGAAGGATTTTCGCAAAATGGCTAAGACTGTAGTCAACCAGgtaataaccg ... gtgggtctagGTCGCCACCAATGATTACAGGGCCGATTTGAAGTCTGCCGCTTTGGCCAGA
EST: CCCTCTTGAAGAAGGATTTTCGCAAAATGGCTAAGACTGTAGTCAACCAG GTCGCCACCAATGATTACAGGGCCGATTTGAAGTCTGCCGCTTTGGCCAGAEST: gi|162261514|gb|FC437531.1|FC437531
genomic: CCCTCTTGAAGAAGGATTTTCGCAAAATGGCTAAGACTGTAGTCAACCAGgtaataaccg ... gtgggtctagGTCGCCACCAATGATTACAGGGCCGATTTGAAGTCTGCCGCTTTGGCCAGA
EST: CCCTCTTGAAGAAGGATTTTCGCAAAATGGCTAAGACTGTAGTCAACCAG GTCGCCACCAATGATTACAGGGCCGATTTGAAGTCTGCCGCTTTGGCCAGAEST: gi|67574153|gb|BJ946977.1|BJ946977
genomic: CCCTCTTGAAGAAGGATTTTCGCAAAATGGCTAAGACTGTAGTCAACCAGgtaataaccg ... gtgggtctagGTCGCCACCAATGATTACAGGGCCGATTTGAAGTCTGCCGCTTTGGCCAGA
EST: CCCTCTTGAAGAAGGATTTTCGCAAAATGGCTAAGACTGTAGTCAACCAG GTCGCCACCAATGATTACAGGGCCGATTTGAAGTCTGCCGCTTTGGCCAGAEST: gi|162273848|gb|FC449779.1|FC449779
genomic: CCCTCTTGAAGAAGGATTTTCGCAAAATGGCTAAGACTGTAGTCAACCAGgtaataaccg ... gtgggtctagGTCGCCACCAATGATTACAGGGCCGATTTGAAGTCTGCCGCTTTGGCCAGA
EST: CCCTCTTGAAGAAGGATTTTCGCAAAATGGCTAAGACTGTAGTCAACCAG GTCGCCACCAATGATTACAGGGCCGATTTGAAGTCTGCCGCTTTGGCCAGAEST: gi|18344706|gb|BJ176747.1|BJ176747
genomic: CCCTCTTGAAGAAGGATTTTCGCAAAATGGCTAAGACTGTAGTCAACCAGgtaataaccg ... gtgggtctagGTCGCCACCAATGATTACAGGGCCGATTTGAAGTCTGCCGCTTTGGCCAGA
EST: CCCTCTTGAAGAAGGATTTTCGCAAAATGGCTAAGACTGTAGTCAACCAG GTCGCCACCAATGATTACAGGGCCGATTTGAAGTCTGCCGCTTTGGCCAGAEST: gi|37823910|gb|BJ581976.1|BJ581976
genomic: CCCTCTTGAAGAAGGATTTTCGCAAAATGGCTAAGACTGTAGTCAACCAGgtaataaccg ... gtgggtctagGTCGCCACCAATGATTACAGGGCCGATTTGAAGTCTGCCGCTTTGGCCAGA
EST: CCCTCTTGAAGAAGGATTTTCGCAAAATGGCTAAGACTGTAGTCAACCAG GTCGCCACCAATGATTACAGGGCCGATTTGAAGTCTGCCGCTTTGGCCAGAEST: gi|162215347|gb|FC391115.1|FC391115
genomic: CCCTCTTGAAGAAGGATTTTCGCAAAATGGCTAAGACTGTAGTCAACCAGgtaataaccg ... gtgggtctagGTCGCCACCAATGATTACAGGGCCGATTTGAAGTCTGCCGCTTTGGCCAGA
EST: CCCTCTTGAAGAAGGATTTTCGCAAAATGGCTAAGACTGTAGTCAACCAG GTCGCCACCAATGATTACAGGGCCGATTTGAAGTCTGCCGCTTTGGCCAGAEST: gi|162213765|gb|FC390380.1|FC390380
genomic: CCCTCTTGAAGAAGGATTTTCGCAAAATGGCTAAGACTGTAGTCAACCAGgtaataaccg ... gtgggtctagGTCGCCACCAATGATTACAGGGCCGATTTGAAGTCTGCCGCTTTGGCCAGA
EST: CCCTCTTGAAGAAGGATTTTCGCAAAATGGCTAAGACTGTAGTCAACCAG GTCGCCACCAATGATTACAGGGCCGATTTGAAGTCTGCCGCTTTGGCCAGAEST: gi|162213766|gb|FC390381.1|FC390381
genomic: CCCTCTTGAAGAAGGATTTTCGCAAAATGGCTAAGACTGTAGTCAACCAGgtaataaccg ... gtgggtctagGTCGCCACCAATGATTACAGGGCCGATTTGAAGTCTGCCGCTTTGGCCAGA
EST: CCCTCTTGAAGAAGGATTTTCGCAAAATGGCTAAGACTGTAGTCAACCAG GTCGCCACCAATGATTACAGGGCCGATTTGAAGTCTGCCGCTTTGGCCAGAEST: gi|37852452|gb|BJ610460.1|BJ610460
genomic: CCCTCTTGAAGAAGGATTTTCGCAAAATGGCTAAGACTGTAGTCAACCAGgtaataaccg ... gtgggtctagGTCGCCACCAATGATTACAGGGCCGATTTGAAGTCTGCCGCTTTGGCCAGA
EST: CCCTCTTGAAGAAGGATTTTCGCAAAATGGCTAAGACTGTAGTCAACCAG GTCGCCACCAATGATTACAGGGCCGATTTGAAGTCTGCCGCTTTGGCCAGAEST: gi|162261513|gb|FC437530.1|FC437530
genomic: CCCTCTTGAAGAAGGATTTTCGCAAAATGGCTAAGACTGTAGTCAACCAGgtaataaccg ... gtgggtctagGTCGCCACCAATGATTACAGGGCCGATTTGAAGTCTGCCGCTTTGGCCAGA
EST: CCTTCTTGAAGAAGGATTTTCGCAAAATGGCTAAGACTGTAGTCAACCAG GTCGCCACCAATGATTACAGGGCCGATTTGAAGTCTGCCGCTTTGGCCAGAEST: gi|162273849|gb|FC449780.1|FC449780
genomic: CCCTCTTGAAGAAGGATTTTCGCAAAATGGCTAAGACTGTAGTCAACCAGgtaataaccg ... gtgggtctagGTCGCCACCAATGATTACAGGGCCGATTTGAAGTCTGCCGCTTTGGCCAGA
EST: CCCTCTTGAAGAAGGATTTTCGCAAAATGGCTAAGACTGTAGTCAACCAG GTCGCCACCAATGATTACAGGGCCGATTTGAAGTCTGCCGCTTTGGCCAGAEST: gi|19777228|gb|BQ039161.1|BQ039161
genomic: CCCTCTTGAAGAAGGATTTTCGCAAAATGGCTAAGACTGTAGTCAACCAGgtaataaccg ... gtgggtctagGTCGCCACCAATGATTACAGGGCCGATTTGAAGTCTGCCGCTTTGGCCAGA
EST: CCCTCTTGAAGAAGGATTTTCGCAAAATGGCTAAGACTGTAGTCAACCAG GTCGCCACCAATGATTACAGGGCCGATTTGAAGTCTGCCGCTTTGGCCAGAEST: gi|18340471|gb|BJ172499.1|BJ172499
genomic: CCCTCTTGAAGAAGGATTTTCGCAAAATGGCTAAGACTGTAGTCAACCAGgtaataaccg ... gtgggtctagGTCGCCACCAATGATTACAGGGCCGATTTGAAGTCTGCCGCTTTGGCCAGA
EST: CCCTCTTGAAGAAGGATTTTCGCAAAATGGCTAAGACTGTAGTCAACCAG GTCGCCACCAATGATTACAGGGCCGATTTGAAGTCTGCCGCTTTGGCCAGAEST: gi|7147930|gb|AW509852.1|AW509852
genomic: CCCTCTTGAAGAAGGATTTTCGCAAAATGGCTAAGACTGTAGTCAACCAGgtaataaccg ... gtgggtctagGTCGCCACCAATGATTACAGGGCCGATTTGAAGTCTGCCGCTTTGGCCAGA
EST: CCCTCTTGAAGAAGGATTTTCGCAAAATGGCTAAGACTGTAGTCAACCAG GTCGCCACCAATGATTACAGGGCCGATTTGAAGTCTGCCGCTTTGGCCAGAEST: gi|162262080|gb|FC436861.1|FC436861
genomic: CCCTCTTGAAGAAGGATTTTCGCAAAATGGCTAAGACTGTAGTCAACCAGgtaataaccg ... gtgggtctagGTCGCCACCAATGATTACAGGGCCGATTTGAAGTCTGCCGCTTTGGCCAGA
EST: CCCTCTTGAAGAAGGATTTTCGCAAAATGGCTAAGACTGTAGTCAACCAG GTCGCCACCAATGATTACAGGGCCGATTTGAAGTCTGCCGCTTTGGCCAGAEST: gi|162209250|gb|FC385170.1|FC385170
genomic: CCCTCTTGAAGAAGGATTTTCGCAAAATGGCTAAGACTGTAGTCAACCAGgtaataaccg ... gtgggtctagGTCGCCACCAATGATTACAGGGCCGATTTGAAGTCTGCCGCTTTGGCCAGA
EST: CCCTCTTGAAGAAGGATTTTCGCAAAATGGCTAAGACTGTAGTCAACCAG GTCGCCACCAATGATTACAGGGCCGATTTGAAGTCTGCCGCTTTGGCCAGAEST: gi|162274650|gb|FC450456.1|FC450456
genomic: CCCTCTTGAAGAAGGATTTTCGCAAAATGGCTAAGACTGTAGTCAACCAGgtaataaccg ... gtgggtctagGTCGCCACCAATGATTACAGGGCCGATTTGAAGTCTGCCGCTTTGGCCAGA
EST: CCCTCTTGAAGAAGGATTTTCGCAAAATGGCTAAGACTGTAGTCAACCAG GTCGCCACCAATGATTACAGGGCCGATTTGAAGTCTGCCGCTTTGGCCAGAEST: gi|162241490|gb|FC414664.1|FC414664
genomic: CCCTCTTGAAGAAGGATTTTCGCAAAATGGCTAAGACTGTAGTCAACCAGgtaataaccg ... gtgggtctagGTCGCCACCAATGATTACAGGGCCGATTTGAAGTCTGCCGCTTTGGCCAGA
EST: CCCTCTTGAAGAAGGATTTTCGCAAAATGGCTAAGACTGTAGTCAACCAG GTCGCCACCAATGATTACAGGGCCGATTTGAAGTCTGCCGCTTTGGCCAGAEST: gi|162251344|gb|FC425516.1|FC425516
genomic: CCCTCTTGAAGAAGGATTTTCGCAAAATGGCTAAGACTGTAGTCAACCAGgtaataaccg ... gtgggtctagGTCGCCACCAATGATTACAGGGCCGATTTGAAGTCTGCCGCTTTGGCCAGA
EST: CCCTCTTGAAGAAGGATTTTCGCAAAATGGCTAAGACTGTAGTCAACCAG GTCGCCACCAATGATTACAGGGCCGATTTGAAGTCTGCCGCTTTGGCCAGAEST: gi|162219282|gb|FC395278.1|FC395278
genomic: CCCTCTTGAAGAAGGATTTTCGCAAAATGGCTAAGACTGTAGTCAACCAGgtaataaccg ... gtgggtctagGTCGCCACCAATGATTACAGGGCCGATTTGAAGTCTGCCGCTTTGGCCAGA
EST: CCCTCTTGAAGAAGGATTTTCGCAAAATGGCTAAGACTGTAGTCAACCAG GTCGCCACCAATGATTACAGGGCCGATTTGAAGTCTGCCGCTTTGGCCAGAEST: gi|19785084|gb|BQ040267.1|BQ040267
genomic: CCCTCTTGAAGAAGGATTTTCGCAAAATGGCTAAGACTGTAGTCAACCAGgtaataaccg ... gtgggtctagGTCGCCACCAATGATTACAGGGCCGATTTGAAGTCTGCCGCTTTGGCCAGA
EST: CCCTCTTGAAGAAGGATTTTCGCAAAATGGCTAAGACTGTAGTCAACCAG GTCGCCACCAATGATTACAGGGCCGATTTGAAGTCTGCCGCTTTGGCCAGA
genomic: CCCTCTTGAAGAAGGATTTTCGCAAAATGGCTAAGACTGTAGTCAACCAGgtaataaccg ... gtgggtctagGTCGCCACCAATGATTACAGGGCCGATTTGAAGTCTGCCGCTTTGGCCAGA
atggaattgtttcgttgcagtttactgacatgtatgagattgtttgtgggtctagGTCGCCACCAATGATTACAGGGCCGATTTGAAGTCTGCCGCTTTGGCCAGATTGGCTGCAGTTCACAAGAGCTTGCGTGTGGCTAAGGCTGGTGTCAGCA
tactgac putative branch site (score: 33)
attgttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaataaccgtatatttgatgacttaatgttaagtgtttttcgttcactgacggtgaatcatcacttgacagtctttctcctacgctgattaaaaaaagtattacttcatggaattgtttcgttgcagtttactgacatgtatgagattgtttgtgggtctagGTCGCCACCAATGATTACAGGGCCGATTTGAAGTCTGCCGCTTTGGCCAGATTGGCTGCAGTTCACAAGAGCTTGCGTGTGGCTAAGGCTGGTGTCAGCA
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- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT