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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacattcgtttatctcggagtactcttgtatcatcgatcaatctgttggcctgcatcttcttaggttcgaggtgattgaatatcagaatacaacaaaaagaatgggttttattcacatgtggtctattctacgaactttgtgcagAAGCTTGTGATAGTGGAAGGTCTAAATCTAGACGAAGTGGAGATGGGCCTCTACACTGTCCACTGCCTCCCTTTGAAACTTCTACAAGCAGAAGGTTGTC

Basic information

species Physcomitrella patens
transcript PP1S98_45V6.1
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|37839684|gb|BJ597692.1|BJ597692
EST:     TTGCAGCATACGTAGACCTTGTTGCTGCACACCGGGTTCTCTTAGGAAAG                         AAGCTTGTGATAGTGGAAGGTCTAAATCTAGACGAAGTGGAGATGGGCCTC
genomic: TTGCAGCATACGTAGACCTTGTTGCTGCACACCGGGTTCTCTTAGGAAAGgtacattcgt ... ctttgtgcagAAGCTTGTGATAGTGGAAGGTCTAAATCTAGACGAAGTGGAGATGGGCCTC
EST: gi|208388826|gb|DC945402.1|DC945402
EST:     TTGCAGCATACGTAGACCTTGTTGCTGCACACCGGGTTCTCTTAGGAAAG                         AAGCTTGTGATAGTGGAAGGTCTAAATCTAGACGAAGTGGAGATGGGCCTC
genomic: TTGCAGCATACGTAGACCTTGTTGCTGCACACCGGGTTCTCTTAGGAAAGgtacattcgt ... ctttgtgcagAAGCTTGTGATAGTGGAAGGTCTAAATCTAGACGAAGTGGAGATGGGCCTC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

caacaaaaagaatgggttttattcacatgtggtctattctacgaactttgtgcagAAGCTTGTGATAGTGGAAGGTCTAAATCTAGACGAAGTGGAGATGGGCCTCTACACTGTCCACTGCCTCCCTTTGAAACTTCTACAAGCAGAAGGTTGTC
                ttttattca  TA-rich tract