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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACATTGCCTTCTCCGCCTATGGAGCAGAGCATCAACATTGAATTAATTGGTAGAGCCGGAGACTCTCAGAGTGAGCCACGACAGCCCTCATATCAAACAGgtaacattagataatttacgagtagtcctatttctcgcacaaatctttttcagaaaaatgtcttttcagtacgcagttctaattttataatttaaactaa...

Basic information

species Physcomitrella patens
transcript PP1S98_43V6.2
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18335412|gb|BJ167431.1|BJ167431
EST:     TAGAGCCGGAGACTCTCAGAGTGAGCCACGACAGCCCTCATATCAAACAG                         GTCATACCGCTGAGGGAATATTAAAAAGCGCCGTGGCTGCTTTACGCACTA
genomic: TAGAGCCGGAGACTCTCAGAGTGAGCCACGACAGCCCTCATATCAAACAGgtaacattag ... tcgcctgcagGTCATACCGCTGAGGGAATATTAAAAAGCGCCGTGGCTGCTTTACGCACTA
EST: gi|162188836|gb|FC364850.1|FC364850
EST:     TAGAGCCGGAGACTCTCAGAGTGAGCCACGACAGCCCTCATATCAAACAG                         GTCATACCGCTGAGGGAATATTAAAAAGCGCCGTGGCTGCTTTACGCACTA
genomic: TAGAGCCGGAGACTCTCAGAGTGAGCCACGACAGCCCTCATATCAAACAGgtaacattag ... tcgcctgcagGTCATACCGCTGAGGGAATATTAAAAAGCGCCGTGGCTGCTTTACGCACTA
EST: gi|162192102|gb|FC368251.1|FC368251
EST:     TAGAGCCGGAGACTCTCAGAGTGAGCCACGACAGCCCTCATATCAAACAG                         GTCATACCGCTGAGGGAATATTAAAAAGCGCCGTGGCTGCTTTACGCACTA
genomic: TAGAGCCGGAGACTCTCAGAGTGAGCCACGACAGCCCTCATATCAAACAGgtaacattag ... tcgcctgcagGTCATACCGCTGAGGGAATATTAAAAAGCGCCGTGGCTGCTTTACGCACTA
EST: gi|162190016|gb|FC366590.1|FC366590
EST:     TAGAGCCGGAGACTCTCAGAGTGAGCCACGACAGCCCTCATATCAAACAG                         GTCATACCGCTGAGGGAATATTAAAAAGCGCCGTGGCTGCTTTACGCACTA
genomic: TAGAGCCGGAGACTCTCAGAGTGAGCCACGACAGCCCTCATATCAAACAGgtaacattag ... tcgcctgcagGTCATACCGCTGAGGGAATATTAAAAAGCGCCGTGGCTGCTTTACGCACTA
EST: gi|162192101|gb|FC368250.1|FC368250
EST:     TAGAGCCGGAGACTCTCAGAGTGAGCCACGACAGCCCTCATATCAAACAG                         GTCATACCGCTGAGGGAATATTAAAAAGCGCCGTGGCTGCTTTACGCACTA
genomic: TAGAGCCGGAGACTCTCAGAGTGAGCCACGACAGCCCTCATATCAAACAGgtaacattag ... tcgcctgcagGTCATACCGCTGAGGGAATATTAAAAAGCGCCGTGGCTGCTTTACGCACTA