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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaagtcctgtaaagtatgccactacataatgttaacacattgtgtgctctggaagaaacttgtgggttgagcatatcccgctcttaggaggtgcttctattgtgttgaaatcacttagaagattgttgtcggcacgtcagGTTATGGCAGGCAAGTCAATAGAAGAAATCAAAGAGGAGGGTCTCAAGGAATTGGCAGCCAACCCTAGTGCATACAAAGTTTTAGATAAGCAGCCGACAT

Basic information

species Physcomitrella patens
transcript PP1S98_29V6.1
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208360830|gb|DC934726.1|DC934726
EST:     TTCAGCGCATCTGCAAGGAAAATGGCATTGCTCGGTGGCCTTACCGCAAG                         GTTATGGCAGGCAAGTCAATAGAAGAAATCAAAGAGGAGGGTCTCAAGGAA
genomic: TTCAGCGCATCTGCAAGGAAAATGGCATTGCTCGGTGGCCTTACCGCAAGgtaaagtcct ... ggcacgtcagGTTATGGCAGGCAAGTCAATAGAAGAAATCAAAGAGGAGGGTCTCAAGGAA
EST: gi|18348865|gb|BJ180914.1|BJ180914
EST:     TTCAGCGCATCTGCAAGGAAAATGGCATTGCTCGGTGGCCTTACCGCAAG                         GTTATGGCAGGCAAGTCAATAGAAGAAATCAAAGAGGAGGGTCTCAAGGAA
genomic: TTCAGCGCATCTGCAAGGAAAATGGCATTGCTCGGTGGCCTTACCGCAAGgtaaagtcct ... ggcacgtcagGTTATGGCAGGCAAGTCAATAGAAGAAATCAAAGAGGAGGGTCTCAAGGAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aggaggtgcttctattgtgttgaaatcacttagaagattgttgtcggcacgtcagGTTATGGCAGGCAAGTCAATAGAAGAAATCAAAGAGGAGGGTCTCAAGGAATTGGCAGCCAACCCTAGTGCATACAAAGTTTTAGATAAGCAGCCGACAT
         ttctatt  TA-rich tract