1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...atttatgcaacttcttagagtatgttttctgatgtttcatgtcgggctatttcattacaagtcttctctgcttcatatactaagaataatatcattgcagATTTGATCGTGCTCGAGGTGTTGAGATTGGGAACAAGGAATTCGAATTGAAGCATGTTGAAGAGGCTTTTACAACTCAAAACTGGATTGTGCGCATATAC
species | Physcomitrella patens |
transcript | PP1S98_21V6.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: TGTTACTATAGGTTCGGAGAAATGCAAACGGAATATGGCAGACCCAGCGG ATTTGATCGTGCTCGAGGTGTTGAGATTGGGAACAAGGAATTCGAATTGAAEST: gi|162152593|gb|FC328871.1|FC328871
genomic: TGTTACTATAGGTTCGGAGAAATGCAAACGGAATATGGCAGACCCAGCGGgtaagttatt ... atcattgcagATTTGATCGTGCTCGAGGTGTTGAGATTGGGAACAAGGAATTCGAATTGAA
EST: TGTTACTATAGGTTCGGAGAAATGCAAACGGAATATGGCAGACCCAGCGG ATTTGATCGTGCTCGAGGTGTTGAGATTGGGAACAAGGAATTCGAATTGAAEST: gi|37841982|gb|BJ599990.1|BJ599990
genomic: TGTTACTATAGGTTCGGAGAAATGCAAACGGAATATGGCAGACCCAGCGGgtaagttatt ... atcattgcagATTTGATCGTGCTCGAGGTGTTGAGATTGGGAACAAGGAATTCGAATTGAA
EST: TGTTACTATAGGTTCGGAGAAATGCAAACGGAATATGGCAGACCCAGCGG ATTTGATCGTGCTCGAGGTGTTGAGATTGGGAACAAGGAATTCGAATTGAAEST: gi|162232823|gb|FC407489.1|FC407489
genomic: TGTTACTATAGGTTCGGAGAAATGCAAACGGAATATGGCAGACCCAGCGGgtaagttatt ... atcattgcagATTTGATCGTGCTCGAGGTGTTGAGATTGGGAACAAGGAATTCGAATTGAA
EST: TGTTACTATAGGTTCGGAGAAATGCAAACGGAATATGGCAGACCCAGCGG ATTTGATCGTGCTCGAGGTGTTGAGATTGGGAAEST: gi|37845713|gb|BJ603721.1|BJ603721
genomic: TGTTACTATAGGTTCGGAGAAATGCAAACGGAATATGGCAGACCCAGCGGgtaagttatt ... atcattgcagATTTGATCGTGCTCGAGGTGTTGAGATTGGGAA
EST: TGTTACTATAGGTTCGGAGAAATGCAAACGGAATATGGCAGACCCAGCGG ATTTGATCGTGCTCGAGGTGTTGAGATTGGGAACAAGGAATTCGAATTGAAEST: gi|37845366|gb|BJ603374.1|BJ603374
genomic: TGTTACTATAGGTTCGGAGAAATGCAAACGGAATATGGCAGACCCAGCGGgtaagttatt ... atcattgcagATTTGATCGTGCTCGAGGTGTTGAGATTGGGAACAAGGAATTCGAATTGAA
EST: TGTTACTATAGGTTCGGAGAAATGCAAACGGAATATGGCAGACCCAGCGG ATTTGATCGTGCTCGAGGTGTTGAGATTGGGAACAAGGAATTCGAATTGAAEST: gi|162150255|gb|FC326340.1|FC326340
genomic: TGTTACTATAGGTTCGGAGAAATGCAAACGGAATATGGCAGACCCAGCGGgtaagttatt ... atcattgcagATTTGATCGTGCTCGAGGTGTTGAGATTGGGAACAAGGAATTCGAATTGAA
EST: TGTTACTATAGGTTCGGAGAAATGCAAACGGAATATGGCAGACCCAGCGG ATTTGATCGTGCTCGAGGTGTTGAGATTGGGAACAAGGAATTCGAATTGAAEST: gi|37839121|gb|BJ597129.1|BJ597129
genomic: TGTTACTATAGGTTCGGAGAAATGCAAACGGAATATGGCAGACCCAGCGGgtaagttatt ... atcattgcagATTTGATCGTGCTCGAGGTGTTGAGATTGGGAACAAGGAATTCGAATTGAA
EST: TGTTACTATAGGTTCGGAGAAATGCAAACGGAATATGGCAGACCCAGCGG ATTTGATCGTGCTCGAGGTGTTGAGATTGGGAACAAGGAATTCGAATTGAAEST: gi|15320139|gb|BI487755.1|BI487755
genomic: TGTTACTATAGGTTCGGAGAAATGCAAACGGAATATGGCAGACCCAGCGGgtaagttatt ... atcattgcagATTTGATCGTGCTCGAGGTGTTGAGATTGGGAACAAGGAATTCGAATTGAA
EST: TGTTACTATAGGTTCGGAGAAATGCAAACGGAATATGGCAGACCCAGCGG ATTTGATCGTGCTCGAGGTGTTGAGATTGGGAACAAGGAATTCGAATTGAAEST: gi|162232822|gb|FC407488.1|FC407488
genomic: TGTTACTATAGGTTCGGAGAAATGCAAACGGAATATGGCAGACCCAGCGGgtaagttatt ... atcattgcagATTTGATCGTGCTCGAGGTGTTGAGATTGGGAACAAGGAATTCGAATTGAA
EST: TGTTACTATAGGTTCGGAGAAATGCAAACGGAATATGGCAGACCCAGCGG ATTTGATCGTGCTCGAGGTGTTGAGATTGGGAACAAGGAATTCGAATTGAA
genomic: TGTTACTATAGGTTCGGAGAAATGCAAACGGAATATGGCAGACCCAGCGGgtaagttatt ... atcattgcagATTTGATCGTGCTCGAGGTGTTGAGATTGGGAACAAGGAATTCGAATTGAA
gctatttcattacaagtcttctctgcttcatatactaagaataatatcattgcagATTTGATCGTGCTCGAGGTGTTGAGATTGGGAACAAGGAATTCGAATTGAAGCATGTTGAAGAGGCTTTTACAACTCAAAACTGGATTGTGCGCATATAC
atatactaagaataat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atttatgcaacttcttagagtatgttttctgatgtttcatgtcgggctatttcattacaagtcttctctgcttcatatactaagaataatatcattgcagATTTGATCGTGCTCGAGGTGTTGAGATTGGGAACAAGGAATTCGAATTGAAGCATGTTGAAGAGGCTTTTACAACTCAAAACTGGATTGTGCGCATATAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG