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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGAATCTGCGGGACTAGAAGTAATCAAACGGTGTTGCACTTGCGATTGAAAGGCTCGGGGGACGGGTTAGGGTTTGTTGGAGTATCGTGTTTTCTATCAGgtggttgttccttggctccatatttattatttttcgtgttatttttggcgttaacagcttgtgtggctgaagggagaaaaagctacgatgtgtgttggtt...

Basic information

species Physcomitrella patens
transcript PP1S98_214V6.4
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162252229|gb|FC425907.1|FC425907
EST:     AGGCTCGGGGGACGGGTTAGGGTTTGTTGGAGTATCGTGTTTTCTATCAGGTG                       
genomic: AGGCTCGGGGGACGGGTTAGGGTTTGTTGGAGTATCGTGTTTTCTATCA---Ggtggttgttc ... tactttgc
EST: gi|18368067|gb|BJ200152.1|BJ200152
EST:     AGGCTCGGGGGACGGGTTAGGGTTTGTTGGAGTATCGTGTTTTCTATCAG                         GGAAGCATGCCGCTTACAGGTACTCAAGGAAGCGATCGAAAGATCGCGATT
genomic: AGGCTCGGGGGACGGGTTAGGGTTTGTTGGAGTATCGTGTTTTCTATCAGgtggttgttc ... tactttgcagGGAAGCATGCCGCTTACAGGTACTCAAGGAAGCGATCGAAAGATCGCGATT
EST: gi|208387788|gb|DC941357.1|DC941357
EST:     AGGCTCGGGGGACGGGTTAGGGTTTGTTGGAGTATCGTGTTTTCTATCAG                         GGAAGCATGCCGCTTACAGGTACTCAAGGAAGCGATCGAAAGATCGCGATT
genomic: AGGCTCGGGGGACGGGTTAGGGTTTGTTGGAGTATCGTGTTTTCTATCAGgtggttgttc ... tactttgcagGGAAGCATGCCGCTTACAGGTACTCAAGGAAGCGATCGAAAGATCGCGATT
EST: gi|208373484|gb|DC931901.1|DC931901
EST:     AGGCTCGGGGGACGGGTTAGGGTTTGTTGGAGTATCGTGTTTTCTATCAG                         GGAAGCATGCCGCTTACAGGTACTCAAGGAAGCGATCGAAAGATCGCGATT
genomic: AGGCTCGGGGGACGGGTTAGGGTTTGTTGGAGTATCGTGTTTTCTATCAGgtggttgttc ... tactttgcagGGAAGCATGCCGCTTACAGGTACTCAAGGAAGCGATCGAAAGATCGCGATT
EST: gi|100425661|gb|BY958707.1|BY958707
EST:     AGGCTCGGGGGACGGGTTAGGGTTTGTTGGAGTATCGTGTTTTCTATCAG                         GGAAGCATGCCGCTTACAGGTACTCAAGGAAGCGATCGAAAGATCGCGATT
genomic: AGGCTCGGGGGACGGGTTAGGGTTTGTTGGAGTATCGTGTTTTCTATCAGgtggttgttc ... tactttgcagGGAAGCATGCCGCTTACAGGTACTCAAGGAAGCGATCGAAAGATCGCGATT
EST: gi|208352976|gb|DC910111.1|DC910111
EST:     AGGCTCGGGGGACGGGTTAGGGTTTGTTGGAGTATCGTGTTTTCTATCAG                         GGAAGCATGCCGCTTACAGGTACTCAAGGAAGCGATCGAAAGATCGCGATT
genomic: AGGCTCGGGGGACGGGTTAGGGTTTGTTGGAGTATCGTGTTTTCTATCAGgtggttgttc ... tactttgcagGGAAGCATGCCGCTTACAGGTACTCAAGGAAGCGATCGAAAGATCGCGATT
EST: gi|100433811|gb|BY960718.1|BY960718
EST:     AGGCTCGGGGGACGGGTTAGGGTTTGTTGGAGTATCGTGTTTTCTATCAG                         GGAAGCATGCCGCTTACAGGTACTCAAGGAAGCGATCGAAAGATCGCGATT
genomic: AGGCTCGGGGGACGGGTTAGGGTTTGTTGGAGTATCGTGTTTTCTATCAGgtggttgttc ... tactttgcagGGAAGCATGCCGCTTACAGGTACTCAAGGAAGCGATCGAAAGATCGCGATT
EST: gi|18363004|gb|BJ195076.1|BJ195076
EST:     AGGCTCGGGGGACGGGTTAGGGTTTGTTGGAGTATCGTGTTTTCTATCAG                         GGAAGCATGCCGCTTACAGGTACTCAAGGAAGCGATCGAAAGATCGCGATT
genomic: AGGCTCGGGGGACGGGTTAGGGTTTGTTGGAGTATCGTGTTTTCTATCAGgtggttgttc ... tactttgcagGGAAGCATGCCGCTTACAGGTACTCAAGGAAGCGATCGAAAGATCGCGATT
EST: gi|208387483|gb|DC933346.1|DC933346
EST:     AGGCTCGGGGGACGGGTTAGGGTTTGTTGGAGTATCGTGTTTTCTATCAG                         GGAAGCATGCCGCTTACAGGTACTCAAGGAAGCGATCGAAAGATCGCGATT
genomic: AGGCTCGGGGGACGGGTTAGGGTTTGTTGGAGTATCGTGTTTTCTATCAGgtggttgttc ... tactttgcagGGAAGCATGCCGCTTACAGGTACTCAAGGAAGCGATCGAAAGATCGCGATT
EST: gi|100384841|gb|BY969576.1|BY969576
EST:     AGGCTCGGGGGACGGGTTAGGGTTTGTTGGAGTATCGTGTTTTCTATCAG                         GGAAGCATGCCGCTTACAGGTACTCAAGGAAGCGATCGAAAGATCGCGATT
genomic: AGGCTCGGGGGACGGGTTAGGGTTTGTTGGAGTATCGTGTTTTCTATCAGgtggttgttc ... tactttgcagGGAAGCATGCCGCTTACAGGTACTCAAGGAAGCGATCGAAAGATCGCGATT
EST: gi|162216213|gb|FC392630.1|FC392630
EST:     AGGCTCGGGGGACGGGTTAGGGTTTGTTGGAGTATCGTGTTTTCTATCAG                         GGAAGCATGCCGCTTACAGGTACTCAAGGAAGCGATCGAAAGATCGCGATT
genomic: AGGCTCGGGGGACGGGTTAGGGTTTGTTGGAGTATCGTGTTTTCTATCAGgtggttgttc ... tactttgcagGGAAGCATGCCGCTTACAGGTACTCAAGGAAGCGATCGAAAGATCGCGATT
EST: gi|208354034|gb|DC930146.1|DC930146
EST:     AGGCTCGGGGGACGGGTTAGGGTTTGTTGGAGTATCGTGTTTTCTATCAG                         GGAAGCATGCCGCTTACAGGTACTCAAGGAAGCGATCGAAAGATCGCGATT
genomic: AGGCTCGGGGGACGGGTTAGGGTTTGTTGGAGTATCGTGTTTTCTATCAGgtggttgttc ... tactttgcagGGAAGCATGCCGCTTACAGGTACTCAAGGAAGCGATCGAAAGATCGCGATT
EST: gi|162263590|gb|FC440100.1|FC440100
EST:     AGGCTCGGGGGACGGGTTAGGGTTTGTTGGAGTATCGTGTTTTCTATCAG                         GGAAGCATGCCGCTTACAGGTACTCAAGGAAGCGATCGAAAGATCGCGATT
genomic: AGGCTCGGGGGACGGGTTAGGGTTTGTTGGAGTATCGTGTTTTCTATCAGgtggttgttc ... tactttgcagGGAAGCATGCCGCTTACAGGTACTCAAGGAAGCGATCGAAAGATCGCGATT
EST: gi|18375323|gb|BJ206901.1|BJ206901
EST:     AGGCTCGGGGGACGGGTTAGGGTTTGTTGGAGTATCGTGTTTTCTATCAG                         GGAAGCATGCCGCTTACAGGTACTCAAGGAAGCGATCGAAAGATCGCGATT
genomic: AGGCTCGGGGGACGGGTTAGGGTTTGTTGGAGTATCGTGTTTTCTATCAGgtggttgttc ... tactttgcagGGAAGCATGCCGCTTACAGGTACTCAAGGAAGCGATCGAAAGATCGCGATT
EST: gi|162180414|gb|FC355835.1|FC355835
EST:     AGGCTCGGGGGACGGGTTAGGGTTTGTTGGAGTATCGTGTTTTCTATCAG                         GGAAGCATGCCGCTTACAGGTACTCAAGGAAGCGATCGAAAGATCGCGATT
genomic: AGGCTCGGGGGACGGGTTAGGGTTTGTTGGAGTATCGTGTTTTCTATCAGgtggttgttc ... tactttgcagGGAAGCATGCCGCTTACAGGTACTCAAGGAAGCGATCGAAAGATCGCGATT
EST: gi|22492564|gb|BU052487.1|BU052487
EST:     AGGCTCGGGGGACGGGTTAGGGTTTGTTGGAGTATCGTGTTTTCTATCAG                         GGAAGCATGCCGCTTACAGGTACTCAAGGAAGCGATCGAAAGATCGCGATT
genomic: AGGCTCGGGGGACGGGTTAGGGTTTGTTGGAGTATCGTGTTTTCTATCAGgtggttgttc ... tactttgcagGGAAGCATGCCGCTTACAGGTACTCAAGGAAGCGATCGAAAGATCGCGATT
EST: gi|100449504|gb|CJ973792.1|CJ973792
EST:     AGGCTCGGGGGACGGGTTAGGGTTTGTTGGAGTATCGTGTTTTCTATCAG                         GGAAGCATGCCGCTTACAGGTACTCAAGGAAGCGATCGAAAGATCGCGATT
genomic: AGGCTCGGGGGACGGGTTAGGGTTTGTTGGAGTATCGTGTTTTCTATCAGgtggttgttc ... tactttgcagGGAAGCATGCCGCTTACAGGTACTCAAGGAAGCGATCGAAAGATCGCGATT
EST: gi|100388120|gb|BY988593.1|BY988593
EST:     AGGCTCGGGGGACGGGTTAGGGTTTGTTGGAGTATCGTGTTTTCTATCAG                         GGAAGCATGCCGCTTACAGGTACTCAAGGAAGCGATCGAAAGATCGCGATT
genomic: AGGCTCGGGGGACGGGTTAGGGTTTGTTGGAGTATCGTGTTTTCTATCAGgtggttgttc ... tactttgcagGGAAGCATGCCGCTTACAGGTACTCAAGGAAGCGATCGAAAGATCGCGATT
EST: gi|162207218|gb|FC382540.1|FC382540
EST:     AGGCTCGGGGGACGGGTTAGGGTTTGTTGGAGTATCGTGTTTTCTATCAG                         GGAAGCATGCCGCTTACAGGTACTCAAGGAAGCGATCGAAAGATCGCGATT
genomic: AGGCTCGGGGGACGGGTTAGGGTTTGTTGGAGTATCGTGTTTTCTATCAGgtggttgttc ... tactttgcagGGAAGCATGCCGCTTACAGGTACTCAAGGAAGCGATCGAAAGATCGCGATT
EST: gi|100384846|gb|BY969581.1|BY969581
EST:     AGGCTCGGGGGACGGGTTAGGGTTTGTTGGAGTATCGTGTTTTCTATCAG                         GTGGGAAGCACGCCGCTTACAGGTACTCAAGGAAGCGATCGAAAGATCGCG
genomic: AGGCTCGGGGGACGGGTTAGGGTTTGTTGGAGTATCGTGTTTTCTATCAGgtggttgttc ... tactttgcagG-G--AAGCATGCCGCTTACAGGTACTCAAGGAAGCGATCGAAAGATCGCG
EST: gi|18355092|gb|BJ187151.1|BJ187151
EST:     AGGCTCGGGGGACGGGTTAGGGTTTGTTGGAGTATCGTGTTTTCTATCAG                         GGAAGCATGCCGCTTACAGGTACTCAAGGAAGCGATCGAAAGATCGCGATT
genomic: AGGCTCGGGGGACGGGTTAGGGTTTGTTGGAGTATCGTGTTTTCTATCAGgtggttgttc ... tactttgcagGGAAGCATGCCGCTTACAGGTACTCAAGGAAGCGATCGAAAGATCGCGATT
EST: gi|208389484|gb|DC929423.1|DC929423
EST:     AGGCTCGGGGGACGGGTTAGGGTTTGTTGGAGTATCGTGTTTTCTATCAG                         GGAAGCATGCCGCTTACAGGTACTCAAGGAAGCGATCGAAAGATCGCGATT
genomic: AGGCTCGGGGGACGGGTTAGGGTTTGTTGGAGTATCGTGTTTTCTATCAGgtggttgttc ... tactttgcagGGAAGCATGCCGCTTACAGGTACTCAAGGAAGCGATCGAAAGATCGCGATT
EST: gi|208389484|gb|DC929423.1|DC929423
EST:     AGGCTCGGGGGACGGGTTAGGGTTTGTTGGAGTATCGTGTTTTCTATCAG                         GGAAGCATGCCGCTTACAGGTACTCAAGGAAGCGATCGAAAGATCGCGATT
genomic: AGGCTCGGGGGACGGGTTAGGGTTTGTTGGAGTATCGTGTTTTCTATCAGgtggttgttc ... tactttgcagGGAAGCATGCCGCTTACAGGTACTCAAGGAAGCGATCGAAAGATCGCGATT
EST: gi|18363670|gb|BJ195742.1|BJ195742
EST:     AGGCTCGGGGGACGGGTTAGGGTTTGTTGGAGTATCGTGTTTTCTATCAG                         GGAAGCATGCCGCTTACAGGTACTCAAGGAAGCGATCGAAAGATCGCGATT
genomic: AGGCTCGGGGGACGGGTTAGGGTTTGTTGGAGTATCGTGTTTTCTATCAGgtggttgttc ... tactttgcagGGAAGCATGCCGCTTACAGGTACTCAAGGAAGCGATCGAAAGATCGCGATT
EST: gi|18361536|gb|BJ193602.1|BJ193602
EST:     AGGCTCGGGGGACGGGTTAGGGTTTGTTGGAGTATCGTGTTTTCTATCAG                         GGAAGCATGCCGCTTACAGGTACTCAAGGAAGCGATCGAAAGATCGCGATT
genomic: AGGCTCGGGGGACGGGTTAGGGTTTGTTGGAGTATCGTGTTTTCTATCAGgtggttgttc ... tactttgcagGGAAGCATGCCGCTTACAGGTACTCAAGGAAGCGATCGAAAGATCGCGATT
EST: gi|208357378|gb|DC910719.1|DC910719
EST:     AGGCTCGGGGGACGGGTTAGGGTTTGTTGGAGTATCGTGTTTTCTATCAG                         GGAAGCATGCCGCTTACAGGTACTCAAGGAAGCGATCGAAAGATCGCGATT
genomic: AGGCTCGGGGGACGGGTTAGGGTTTGTTGGAGTATCGTGTTTTCTATCAGgtggttgttc ... tactttgcagGGAAGCATGCCGCTTACAGGTACTCAAGGAAGCGATCGAAAGATCGCGATT
EST: gi|100396293|gb|BY990058.1|BY990058
EST:     AGGCTCGGGGGACGGGTTAGGGTTTGTTGGAGTATCGTGTTTTCTATCAG                         GGAAGCATGCCGCTTACAGGTACTCAAGGAAGCGATCGAAAGATCGCGATT
genomic: AGGCTCGGGGGACGGGTTAGGGTTTGTTGGAGTATCGTGTTTTCTATCAGgtggttgttc ... tactttgcagGGAAGCATGCCGCTTACAGGTACTCAAGGAAGCGATCGAAAGATCGCGATT
EST: gi|162245832|gb|FC420473.1|FC420473
EST:     AGGCTCGGGGGACGGGTTAGGGTTTGTTGGAGTATCGTGTTTTCTATCAG                         GGAAGCATGCCGCTTACAGGTACTCAAGGAAGCGATCGAAAGATCGCGATT
genomic: AGGCTCGGGGGACGGGTTAGGGTTTGTTGGAGTATCGTGTTTTCTATCAGgtggttgttc ... tactttgcagGGAAGCATGCCGCTTACAGGTACTCAAGGAAGCGATCGAAAGATCGCGATT
EST: gi|100431344|gb|BY960149.1|BY960149
EST:     AGGCTCGGGGGACGGGTTAGGGTTTGTTGGAGTATCGTGTTTTCTATCAG                         GGAAGCATGCCGCTTACAGGTACTCAAGGAAGCGATCGAAAGATCGCGATT
genomic: AGGCTCGGGGGACGGGTTAGGGTTTGTTGGAGTATCGTGTTTTCTATCAGgtggttgttc ... tactttgcagGGAAGCATGCCGCTTACAGGTACTCAAGGAAGCGATCGAAAGATCGCGATT
EST: gi|162239278|gb|FC416521.1|FC416521
EST:     AGGCTCGGGGGACGGGTTAGGGTTTGTTGGAGTATCGTGTTTTCTATCAGGTG                       
genomic: AGGCTCGGGGGACGGGTTAGGGTTTGTTGGAGTATCGTGTTTTCTATCA---Ggtggttgttc ... tactttgc
EST: gi|100368940|gb|BY984950.1|BY984950
EST:     AGGCTCGGGGGACGGGTTAGGGTTTGTTGGAGTATCGTGTTTTCTATCAG                         GGAAGCATGCCGCTTACAGGTACTCAAGGAAGCGATCGAAAGATCGCGATT
genomic: AGGCTCGGGGGACGGGTTAGGGTTTGTTGGAGTATCGTGTTTTCTATCAGgtggttgttc ... tactttgcagGGAAGCATGCCGCTTACAGGTACTCAAGGAAGCGATCGAAAGATCGCGATT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GGAATCTGCGGGACTAGAAGTAATCAAACGGTGTTGCACTTGCGATTGAAAGGCTCGGGGGACGGGTTAGGGTTTGTTGGAGTATCGTGTTTTCTATCAGgtggttgttccttggctccatatttattatttttcgtgttatttttggcgttaacagcttgtgtggctgaagggagaaaaagctacgatgtgtgttggtt

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