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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...acaacatgagtctgttgcttataaccccagaaaatgcagttgtttgtgcaatcgctctcggaaagtctgattaaacccgtctggtttttgtgcctggcagGTGTAGGTGCTACAAGACGATCTCGTAAAGCTCGTCTTGGAAGCGTCAGCGATTACTGCCTTCATCATTGTGAGTGTCCCGTTATTGTTGTGAGGTTTCC

Basic information

species Physcomitrella patens
transcript PP1S98_214V6.2
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|37839245|gb|BJ597253.1|BJ597253
EST:     CTTGGAGGTTGAGCGTCTTGGAGTCAGTGCAATGATCATGGGAAGCCGAG                         GTGTAGGTGCTACAAGACGATCTCGTAAAGCTCGTCTTGGAAGCGTCAGCG
genomic: CTTGGAGGTTGAGCGTCTTGGAGTCAGTGCAATGATCATGGGAAGCCGAGgtaggggttt ... tgcctggcagGTGTAGGTGCTACAAGACGATCTCGTAAAGCTCGTCTTGGAAGCGTCAGCG
EST: gi|208373949|gb|DC944682.1|DC944682
EST:     CTTGGAGGTTGAGCGTCTTGGAGTCAGTGCAATGATCATGGGAAGCCGAG                         GTGTAGGTGCTACAAGACGATCTCGTAAAGCTCGTCTTGGAAGCGTCAGCG
genomic: CTTGGAGGTTGAGCGTCTTGGAGTCAGTGCAATGATCATGGGAAGCCGAGgtaggggttt ... tgcctggcagGTGTAGGTGCTACAAGACGATCTCGTAAAGCTCGTCTTGGAAGCGTCAGCG
EST: gi|208367582|gb|DC943957.1|DC943957
EST:     CTTGGAGGTTGAGCGTCTTGGAGTCAGTGCAATGATCATGGGAAGCCGAG                         GTGTAGGTGCTACAAGACGATCTCGTAAAGCTCGTCTTGGAAGCGTCAGCG
genomic: CTTGGAGGTTGAGCGTCTTGGAGTCAGTGCAATGATCATGGGAAGCCGAGgtaggggttt ... tgcctggcagGTGTAGGTGCTACAAGACGATCTCGTAAAGCTCGTCTTGGAAGCGTCAGCG
EST: gi|37844423|gb|BJ602431.1|BJ602431
EST:     CTTGGAGGTTGAGCGTCTTGGAGTCAGTGCAATGATCATGGGAAGCCGAG                         GTGTAGGTGCTACAAGACGATCTCGTAAAGCTCGTCTTGGAAGCGTCAGCG
genomic: CTTGGAGGTTGAGCGTCTTGGAGTCAGTGCAATGATCATGGGAAGCCGAGgtaggggttt ... tgcctggcagGTGTAGGTGCTACAAGACGATCTCGTAAAGCTCGTCTTGGAAGCGTCAGCG
EST: gi|162271782|gb|FC448915.1|FC448915
EST:     CTTGGAGGTTGAGCGTCTTGGAGTCAGTGCAATGATCATGGGAAGCCGAG                         GTGTAGGTGCTACAAGACGATCTCGTAAAGCTCGTCTTGGAAGCGTCAGCG
genomic: CTTGGAGGTTGAGCGTCTTGGAGTCAGTGCAATGATCATGGGAAGCCGAGgtaggggttt ... tgcctggcagGTGTAGGTGCTACAAGACGATCTCGTAAAGCTCGTCTTGGAAGCGTCAGCG
EST: gi|37840221|gb|BJ598229.1|BJ598229
EST:     CTTGGAGGTTGAGCGTCTTGGAGTCAGTGCAATGATCATGGGAAGCCGAG                         GTGTAGGTGCTACAAGACGATCTCGTAAAGCTCGTCTTGGAAGCGTCAGCG
genomic: CTTGGAGGTTGAGCGTCTTGGAGTCAGTGCAATGATCATGGGAAGCCGAGgtaggggttt ... tgcctggcagGTGTAGGTGCTACAAGACGATCTCGTAAAGCTCGTCTTGGAAGCGTCAGCG
EST: gi|15261883|gb|BI437193.1|BI437193
EST:     CTTGGAGGGTGAGCGGCTTGGAGTCAGTGCAATGATCATGGGAAGCCGAG                         GTGTAGGTGCTACAAGACGATCTCGTAAAGCTCGTCTTGGAAGCGTCAGCG
genomic: CTTGGAGGTTGAGCGTCTTGGAGTCAGTGCAATGATCATGGGAAGCCGAGgtaggggttt ... tgcctggcagGTGTAGGTGCTACAAGACGATCTCGTAAAGCTCGTCTTGGAAGCGTCAGCG
EST: gi|37840816|gb|BJ598824.1|BJ598824
EST:     TGGAGTCAGTGCAATGATCATGGGAAGCCGAG                         GTGTAGGTGCTACAAGACGATCTCGTAAAGCTCGTCTTGGAAGCGTCAGCG
genomic: TGGAGTCAGTGCAATGATCATGGGAAGCCGAGgtaggggttt ... tgcctggcagGTGTAGGTGCTACAAGACGATCTCGTAAAGCTCGTCTTGGAAGCGTCAGCG
EST: gi|208360624|gb|DC946404.1|DC946404
EST:     CTTGGAGGTTGAGCGTCTTGGAGTCAGTGCAATGATCATGGGAAGCCGAG                         GTGTAGGTGCTACAAGACGATCTCGTAAAGCTCGTCTTGGAAGCGTCAGCG
genomic: CTTGGAGGTTGAGCGTCTTGGAGTCAGTGCAATGATCATGGGAAGCCGAGgtaggggttt ... tgcctggcagGTGTAGGTGCTACAAGACGATCTCGTAAAGCTCGTCTTGGAAGCGTCAGCG
EST: gi|162263563|gb|FC440099.1|FC440099
EST:     CTTGGAGGTTGAGCGTCTTGGAGTCAGTGCAATGATCATGGGAAGCCGAG                         GTGTAGGTGCTACAAGACGATCTCGTAAAGCTCGTCTTGGAAGCGTCAGCG
genomic: CTTGGAGGTTGAGCGTCTTGGAGTCAGTGCAATGATCATGGGAAGCCGAGgtaggggttt ... tgcctggcagGTGTAGGTGCTACAAGACGATCTCGTAAAGCTCGTCTTGGAAGCGTCAGCG
EST: gi|22132388|gb|BQ827128.1|BQ827128
EST:     CTTGGAGGTTGAGCGTCTTGGAGTCAGTGCAATGATCATGGGAAGCCGAG                         GTGTAGGTGCTACAAGACGATCTCGTAAAGCTCGTCTTGGAAGCGTCAGCG
genomic: CTTGGAGGTTGAGCGTCTTGGAGTCAGTGCAATGATCATGGGAAGCCGAGgtaggggttt ... tgcctggcagGTGTAGGTGCTACAAGACGATCTCGTAAAGCTCGTCTTGGAAGCGTCAGCG
EST: gi|18339851|gb|BJ171878.1|BJ171878
EST:     TTGGAGTCAGTGCAATGATCATGGGAAGCCGAG                         GTGTAGGTGCTACAAGACGATCTCGTAAAGCTCGTCTTGGAAGCGTCAGCG
genomic: TTGGAGTCAGTGCAATGATCATGGGAAGCCGAGgtaggggttt ... tgcctggcagGTGTAGGTGCTACAAGACGATCTCGTAAAGCTCGTCTTGGAAGCGTCAGCG
EST: gi|162252228|gb|FC425906.1|FC425906
EST:     CTTGGAGGTTGAGCGTCTTGGAGTCAGTGCAATGATCATGGGAAGCCGAG                         GTGTAGGTGCTACAAGACGATCTCGTAAAGCTCGTCTTGGAAGCGTCAGCG
genomic: CTTGGAGGTTGAGCGTCTTGGAGTCAGTGCAATGATCATGGGAAGCCGAGgtaggggttt ... tgcctggcagGTGTAGGTGCTACAAGACGATCTCGTAAAGCTCGTCTTGGAAGCGTCAGCG
EST: gi|162216212|gb|FC392629.1|FC392629
EST:     CTTGGAGGTTGAGCGTCTTGGAGTCAGTGCAATGATCATGGGAAGCCGAG                         GTGTAGGTGCTACAAGACGATCTCGTAAAGCTCGTCTTGGAAGCGTCAGCG
genomic: CTTGGAGGTTGAGCGTCTTGGAGTCAGTGCAATGATCATGGGAAGCCGAGgtaggggttt ... tgcctggcagGTGTAGGTGCTACAAGACGATCTCGTAAAGCTCGTCTTGGAAGCGTCAGCG
EST: gi|162266202|gb|FC441731.1|FC441731
EST:     CTTGGAGGTTGAGCGTCTTGGAGTCAGTGCAATGATCATGGGAAGCCGAG                         GTGTAGGTGCTACAAGACGATCTCGTAAAGCTCGTCTTGGAAGCGTCAGCG
genomic: CTTGGAGGTTGAGCGTCTTGGAGTCAGTGCAATGATCATGGGAAGCCGAGgtaggggttt ... tgcctggcagGTGTAGGTGCTACAAGACGATCTCGTAAAGCTCGTCTTGGAAGCGTCAGCG
EST: gi|208368926|gb|DC947484.1|DC947484
EST:     C-TGGAGGTTGAGCGTCTTGGAGTCAGTGCAATGATCATGGGAAGCCGAG                         GTGTAGGTGCTACAAGACGATCTCGTAAAGCTCGTCTTGGAAGCGTCAGCG
genomic: CTTGGAGGTTGAGCGTCTTGGAGTCAGTGCAATGATCATGGGAAGCCGAGgtaggggttt ... tgcctggcagGTGTAGGTGCTACAAGACGATCTCGTAAAGCTCGTCTTGGAAGCGTCAGCG
EST: gi|208395153|gb|DC923952.1|DC923952
EST:     CTTGGAGGTTGAGCGTCTTGGAGTCAGTGCAATGATCATGGGAAGCCGAG                         GTGTAGGTGCTACAAGACGATCTCGTAAAGCTCGTCTTGGAAGCGTCAGCG
genomic: CTTGGAGGTTGAGCGTCTTGGAGTCAGTGCAATGATCATGGGAAGCCGAGgtaggggttt ... tgcctggcagGTGTAGGTGCTACAAGACGATCTCGTAAAGCTCGTCTTGGAAGCGTCAGCG
EST: gi|162245831|gb|FC420472.1|FC420472
EST:     TGGAGGTTGAGCGTCTTGGAGTCAGTGCAATGATCATGGGAAGCCGAG                         GTGTAGGTGCTACAAGACGATCTCGTAAAGCTCGTCTTGGAAGCGTCAGCG
genomic: TGGAGGTTGAGCGTCTTGGAGTCAGTGCAATGATCATGGGAAGCCGAGgtaggggttt ... tgcctggcagGTGTAGGTGCTACAAGACGATCTCGTAAAGCTCGTCTTGGAAGCGTCAGCG
EST: gi|208363175|gb|DC954361.1|DC954361
EST:     CNTGGAGGTTGAGCGTCTTGGAGTCAGTGCAATGATCATGGGAAGCCGAG                         GTGTAGGTGCTACAAGACGATCTCGTAAAGCTCGTCTTGGAAGCGTCAGCG
genomic: CTTGGAGGTTGAGCGTCTTGGAGTCAGTGCAATGATCATGGGAAGCCGAGgtaggggttt ... tgcctggcagGTGTAGGTGCTACAAGACGATCTCGTAAAGCTCGTCTTGGAAGCGTCAGCG
EST: gi|22492468|gb|BU052391.1|BU052391
EST:     CTTGGAGGTTGAGCGTCTTGGAGTCAGTGCAATGATCATGGGAAGCCGAG                         GTGTAGGTGCTACAAGACGATCTCGTAAAGCTCGTCTTGGAAGCGTCAGCG
genomic: CTTGGAGGTTGAGCGTCTTGGAGTCAGTGCAATGATCATGGGAAGCCGAGgtaggggttt ... tgcctggcagGTGTAGGTGCTACAAGACGATCTCGTAAAGCTCGTCTTGGAAGCGTCAGCG
EST: gi|162239277|gb|FC416520.1|FC416520
EST:     CTTGGAGGTTGAGCGTCTTGGAGTCAGTGCAATGATCATGGGAAGCCGAG                         GTGTAGGTGCTACAAGACGATCTCGTAAAGCTCGTCTTGGAAGCGTCAGCG
genomic: CTTGGAGGTTGAGCGTCTTGGAGTCAGTGCAATGATCATGGGAAGCCGAGgtaggggttt ... tgcctggcagGTGTAGGTGCTACAAGACGATCTCGTAAAGCTCGTCTTGGAAGCGTCAGCG
EST: gi|162207217|gb|FC382539.1|FC382539
EST:     CTTGGAGGTTGAGCGTCTTGGAGTCAGTGCAATGATCATGGGAAGCCGAG                         GTGTAGGTGCTACAAGACGATCTCGTAAAGCTCGTCTTGGAAGCGTCAGCG
genomic: CTTGGAGGTTGAGCGTCTTGGAGTCAGTGCAATGATCATGGGAAGCCGAGgtaggggttt ... tgcctggcagGTGTAGGTGCTACAAGACGATCTCGTAAAGCTCGTCTTGGAAGCGTCAGCG
EST: gi|162245832|gb|FC420473.1|FC420473
EST:     CTTGGAGGTTGAGCGTCTTGGAGTCAGTGCAATGATCATGGGAAGCCGAG                         GTGTAGGTGCTACAAGACGATCTCGTAAAGCTCGTCTTGGAAGCGTCAGCG
genomic: CTTGGAGGTTGAGCGTCTTGGAGTCAGTGCAATGATCATGGGAAGCCGAGgtaggggttt ... tgcctggcagGTGTAGGTGCTACAAGACGATCTCGTAAAGCTCGTCTTGGAAGCGTCAGCG
EST: gi|208396071|gb|DC924537.1|DC924537
EST:     TTGGAGTCAGTGCAATGATCATGGGAAGCCGAG                         GTGTAGGTGCTACAAGACGATCTCGTAAAGCTCGTCTTGGAAGCGTCAGCG
genomic: TTGGAGTCAGTGCAATGATCATGGGAAGCCGAGgtaggggttt ... tgcctggcagGTGTAGGTGCTACAAGACGATCTCGTAAAGCTCGTCTTGGAAGCGTCAGCG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtgcaatcgctctcggaaagtctgattaaacccgtctggtttttgtgcctggcagGTGTAGGTGCTACAAGACGATCTCGTAAAGCTCGTCTTGGAAGCGTCAGCGATTACTGCCTTCATCATTGTGAGTGTCCCGTTATTGTTGTGAGGTTTCC
                   gtctgat  putative branch site (score: 4)
                                       tttttgt  putative PPT
                      tgattaaa  TA-rich tract