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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ttggatatgaaatgtacactgtaaactaacacgatttctgtagatattgagaaggatttctagttattactgatgtattgtatttacaacatgtggacagGTTGCAAGGAGTGTTCAATTTCCTCTCTCCAAGTATTTGCTTCACGGCTAATTATAATGCGCTGAAACTCGATTACTTCTGGTGACATAAAAAGTGCCTT

Basic information

species Physcomitrella patens
transcript PP1S98_20V6.1
intron # 6
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|37834867|gb|BJ592879.1|BJ592879
EST:     ACGGCAATGCTCGTTATCGCTGCAACGTAGATGGAAACCTTATTCAGAAG                         GTTGCAAGGAGTGTTCAATTTCCTCTCTCCAAGTATTTGCTTCACGGCTAA
genomic: ACGGCAATGCTCGTTATCGCTGCAACGTAGATGGAAACCTTATTCAGAAGgttactttct ... atgtggacagGTTGCAAGGAGTGTTCAATTTCCTCTCTCCAAGTATTTGCTTCACGGCTAA
EST: gi|18336021|gb|BJ168043.1|BJ168043
EST:     ACGGCAATGCTCGTTATCGCTGCAACGTAGATGGAAACCTTATTCAGAAG                         GTTGCAAGGAGTGTTCAATTTCCTCTCTCCAAGTATTTGCTTCACGGCTAA
genomic: ACGGCAATGCTCGTTATCGCTGCAACGTAGATGGAAACCTTATTCAGAAGgttactttct ... atgtggacagGTTGCAAGGAGTGTTCAATTTCCTCTCTCCAAGTATTTGCTTCACGGCTAA
EST: gi|37850348|gb|BJ608356.1|BJ608356
EST:     ACGGCAATGCTCGTTATCGCTGCAACGTAGATGGAAACCTTATTCAGAAG                         GTTGCAAGGAGTGTTCAATTTCCTCTCTCCAAGTATTTGCTTCACGGCTAA
genomic: ACGGCAATGCTCGTTATCGCTGCAACGTAGATGGAAACCTTATTCAGAAGgttactttct ... atgtggacagGTTGCAAGGAGTGTTCAATTTCCTCTCTCCAAGTATTTGCTTCACGGCTAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

attgagaaggatttctagttattactgatgtattgtatttacaacatgtggacagGTTGCAAGGAGTGTTCAATTTCCTCTCTCCAAGTATTTGCTTCACGGCTAATTATAATGCGCTGAAACTCGATTACTTCTGGTGACATAAAAAGTGCCTT
                      tactgat  putative branch site (score: 2)
          atttctagttatta  TA-rich tract