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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAGGGATTATGGAATCTTTAACAACATCCATCACGACATTGGTACCCATGTGGTGCACCACTTGTTTCCTCAGATTCCTCACTACCATCTGATCGAAGCGgtaagttgtgctagttgagcaattgtcggacgaaatgttgggtactgtgttaagagttgtggacattatgtaggtgatggtgacggggtatgccatggaggctgaggtgcaatactgtctgtgcag

Basic information

species Physcomitrella patens
transcript PP1S98_209V6.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S98_209V6.1 (Physcomitrella patens), 5'ss of exon 6
lower sequence: GRMZM2G128971_T03 (Zea mays), 5'ss of exon 3
CAGGGATTATGGAATCTTTAACAACATCCATCACGACATTGGTACCCATGTGGTGCACCACTTGTTTCCTCAGATTCCTCACTACCATCTGATCGAAGCGgtaagttgtgctagttgagcaattgtcggacgaaatgttgggtactgtgttaagagttgtggacattatgtaggtgatggtgacggggtatgccatggaggctgaggtgcaatactgtctgtgcag
| |||| || |||    | |||||||||||||||||||| || || |||||  | || ||| | || |||||||| || || |||||||| ||||| ||||||||   | |   |    |  ||| |        | ||   | || |      ||||     | |    ||| | ||   |||  | | |    |||| | ||   ||||               
CCGGGACTACGGATGGATCAACAACATCCATCACGACATCGGAACTCATGTCATCCATCACCTCTTCCCTCAGATCCCGCATTACCATCTCATCGAGGCGgtaagggtttcccct---actcttgcctt------ttttcttttcttttcagcaagttt----cttcgcctagatcataa-gacctgcttttttttggatg-tggcctgcag--------------

upper sequence: PP1S98_209V6.1 (Physcomitrella patens), 5'ss of exon 6
lower sequence: AT2G29980.2 (Arabidopsis thaliana), 5'ss of exon 6
CAGGGATTATGGAATCTTTAACAACATCCATCACGACATTGGTACCCATGTGGTGCACCACTTGTTTCCTCAGATTCCTCACTACCATCTGATCGAAGCGgtaagttgt--gctagttgagcaattgtcggacgaaatgttgggtactgtgttaagagttgtggacattatgtaggtgatggtgacggggtatgccatggaggctgaggtgcaatactgtctgtgcag
 || ||||| ||||||||||||||||| |||||||||||||| || || ||| | || ||  | || || || || |||||||| ||  || |||| || || |||  |    |  ||     ||  |  ||   |||     ||  |     || ||  |||   | ||  ||||   || | |   | |     |  |                            
TAGAGATTACGGAATCTTTAACAACATTCATCACGACATTGGAACTCACGTGATCCATCATCTCTTCCCACAAATCCCTCACTATCACTTGGTCGACGCCgtgagtgatcatttcattacattatattgagatttaatacatagtgttactagaaaag--gtgattaataattagggattgtttaattgattaatgacag----------------------------

upper sequence: PP1S98_209V6.1 (Physcomitrella patens), 5'ss of exon 6
lower sequence: EFJ23113 (Selaginella moellendorffii), 5'ss of exon 7
CAGGGATTATGGAATCTTTAACAACATCCATCACGACATTGGTACCCATGTGGTGCACCACTTGTTTCCTCAGATTCCTCACTACCATCTGATCGAAGCGgtaagttgtgctagttgagcaattgtcggacgaaatgttgggtactgtgttaagagttgtggacattatgtaggtgatggtgacggggtatgccatggaggctgaggtgcaatactgtctgtgcag
| | || |||||| | || || ||||| || ||||||||||| || ||||| ||||| || ||||| || |||||||| ||||||||| |||||||||| |||||||    |   ||||   |     |    |  | |      | | || | | ||        | |||||                                                     
CCGAGACTATGGATTGTTCAATAACATTCACCACGACATTGGAACGCATGTCGTGCATCATTTGTTCCCGCAGATTCCACACTACCATTTGATCGAAGCCgtaagtt----tctctgagtggtatcaagggtcatcgattaacgttcttttcaaatttcc------tgtgtag-----------------------------------------------------

upper sequence: PP1S98_209V6.1 (Physcomitrella patens), 5'ss of exon 6
lower sequence: EFJ20170 (Selaginella moellendorffii), 5'ss of exon 7
CAGGGATTATGGAATCTTTAACAACATCCATCACGACATTGGTACCCATGTGGTGCACCACTTGTTTCCTCAGATTCCTCACTACCATCTGATCGAAGCGgtaagttgtgctagttgagcaattgtcggacgaaatgttgggtactgtgttaagagttgtggacattatgtaggtgatggtgacggggtatgccatggaggctgaggtgcaatactgtctgtgcag
| | || |||||| | || || ||||| || ||||||||||| || ||||| ||||| || ||||| || || ||||| ||||||||| |||||||||| |||||||    |   |||| | |     |    |  | |      | | || | | ||        | |||||                                                     
CCGAGACTATGGATTGTTCAATAACATTCACCACGACATTGGAACGCATGTCGTGCATCATTTGTTCCCGCAAATTCCACACTACCATTTGATCGAAGCCgtaagtt----tctctgagtagtatcaagggtcatcgattaacgttcttttcaaatttcc------tgtgtag-----------------------------------------------------