Sequence
atgc intronic sequence ATGC exonic sequenceTTTCAAGAAGCTTAGTTGGTCGCGCATCCAGCCTTTCACTGCAAATGAGTCTGACTTTCAGAGCTGATGAATGCAACGAACTTCAGTCCATGGAGAATTGgtgaatattctgcctacctcttttgacgcttagaactacatgcatagatgtacttaacaagcgtgaaagtgttaaagtcgtaaagaatttcagagctgat...
Basic information
species | Physcomitrella patens |
transcript | PP1S98_202V6.4 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|100394837|gb|BY989950.1|BY989950EST: CTGACTTTCAGAGCTGATGAATGCAACGAACTTCAGTCCATGGAGAATTG GTTAAATGCGGGAACAAGCTGGAGCGAGCATCATGGAATTGTGGACGTTGA
genomic: CTGACTTTCAGAGCTGATGAATGCAACGAACTTCAGTCCATGGAGAATTGgtgaatattc ... cacttcgcagGTTAAATGCGGGAACAAGCTGGAGCGAGCATCATGGAATTGTGGACGTTGA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TTTCAAGAAGCTTAGTTGGTCGCGCATCCAGCCTTTCACTGCAAATGAGTCTGACTTTCAGAGCTGATGAATGCAACGAACTTCAGTCCATGGAGAATTGgtgaatattctgcctacctcttttgacgcttagaactacatgcatagatgtacttaacaagcgtgaaagtgttaaagtcgtaaagaatttcagagctgat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA