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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...agcgtgcattttcagtgcctagttgcgcaattattagtagtctgcgccgtgtgctggagcagaggactcattacaatggaaatgctgtattttgaaacagGTAGTTCAGCTCACGGAGTACGATATTGAAAACTTTAGCTACTTTTCAAGAAGCTTAGTTGGTCGCGCATCCAGCCTTTCACTGCAAATGAGTCTGACTT

Basic information

species Physcomitrella patens
transcript PP1S98_202V6.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|100389896|gb|BY971248.1|BY971248
EST:     AGTTAGATCGAGAAGAGATAACATGCCACTCTGGGAGGACTTTTCTACGG                         GTAGTTCAGCTCACGGAGTACGATATTGAAAACTTTAGCTACTTTTCAAGA
genomic: GGTTAGATCGAGAAGAGATAACATGCCACTCTGGGAGGACTTTTCTACGGgtgcatgttt ... tttgaaacagGTAGTTCAGCTCACGGAGTACGATATTGAAAACTTTAGCTACTTTTCAAGA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gccgtgtgctggagcagaggactcattacaatggaaatgctgtattttgaaacagGTAGTTCAGCTCACGGAGTACGATATTGAAAACTTTAGCTACTTTTCAAGAAGCTTAGTTGGTCGCGCATCCAGCCTTTCACTGCAAATGAGTCTGACTT
                                          tattttgaaa  TA-rich tract