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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCAGACAATAGAGAGTATTTTATCTCGTCATTTTCCCAAAACAGgtgattaccagcattatctgaatccggcaatcttcaggtttgatggatttaattgccatcgaagttaatgttctgcactgtcctgaacattgctgaacattgatttaagctgcactttaattatctgcctctaatttgcctaataatggttccag

Basic information

species Physcomitrella patens
transcript PP1S98_192V6.1
intron # 4
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|37839573|gb|BJ597581.1|BJ597581
EST:     GCAGACAATAGAGAGTATTTTATCTCGTCATTTTCCCAAAACAG                         GATTATGGTTTCAAGATCCAGATCTTTACCATTTTAGCATGCATCATGCGT
genomic: GCAGACAATAGAGAGTATTTTATCTCGTCATTTTCCCAAAACAGgtgattacca ... atggttccagGATTATGGTTTCAAGATCCAGATCTTTACCATTTTAGCATGCATCATGCGT
EST: gi|208387166|gb|DC945465.1|DC945465
EST:     GCAGACAATAGAGAGTATTTTATCTCGTCATTTTCCCAAAACAG                         GATTATGGTTTCAAGATCCAGATCTTTACCATTTTAGCATGCATCATGCGT
genomic: GCAGACAATAGAGAGTATTTTATCTCGTCATTTTCCCAAAACAGgtgattacca ... atggttccagGATTATGGTTTCAAGATCCAGATCTTTACCATTTTAGCATGCATCATGCGT
EST: gi|37832405|gb|BJ590417.1|BJ590417
EST:     CGTCATTTTCCCAAAACAG                         GATTATGGTTTCAAGATCCAGATCTTTTACCATTTTAGCATGCATCATGCG
genomic: CGTCATTTTCCCAAAACAGgtgattacca ... atggttccagGATTATGGTTTCAAGATCCAGATC-TTTACCATTTTAGCATGCATCATGCG