1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...aatattcaatattatccaatgttgaaatatttaatttaggcaagatatgtgttctttgcacactaaattcttatgaacctaatggtgtttcaacatacagTTCTGGAAGGTCGGTTGTGGAAAGGACTCTGTTTGAAAGAGTTTCCTGAGGTGAAGTTATTCGAGGAGGTCGCCGAGTTCGTTGAGCTAGACCAACCGAG
species | Physcomitrella patens |
transcript | PP1S98_185V6.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GCAGGACATCGCCAACGCCACTGGTGTCTGCCGCTCTTGGCGTCGTTTTG TTCTGGAAGGTCGGTTGTGGAAAGGACTCTGTTTGAAAGAGTTTCCTGAGGEST: gi|100409323|gb|BY991954.1|BY991954
genomic: GCAGGACATCGCCAACGCCACTGGTGTCTGCCGCTCTTGGCGTCGTTTTGgtccgttgca ... caacatacagTTCTGGAAGGTCGGTTGTGGAAAGGACTCTGTTTGAAAGAGTTTCCTGAGG
EST: GCAGGACATCGCCAACGCCACTGGTGTCTGCCGCTCTTGGCGTCGTTTTG TTCTGGAAGGTCGGTTGTGGAAAGGACTCTGTTTGAAAGAGTTTCCTGAGGEST: gi|162159937|gb|FC336190.1|FC336190
genomic: GCAGGACATCGCCAACGCCACTGGTGTCTGCCGCTCTTGGCGTCGTTTTGgtccgttgca ... caacatacagTTCTGGAAGGTCGGTTGTGGAAAGGACTCTGTTTGAAAGAGTTTCCTGAGG
EST: GCAGGACATCGCCAACGCCACTGGTGTCTGCCGCTCTTGGCGTCGTTTTG TTCTGGAAGGTCGGTTGTGGAAAGGACTCTGTTTGAAAGAGTTTCCTGAGGEST: gi|67570110|gb|BJ942934.1|BJ942934
genomic: GCAGGACATCGCCAACGCCACTGGTGTCTGCCGCTCTTGGCGTCGTTTTGgtccgttgca ... caacatacagTTCTGGAAGGTCGGTTGTGGAAAGGACTCTGTTTGAAAGAGTTTCCTGAGG
EST: GCAGGACATCGCCAACGCCACTGGTGTCTGCCGCTCTTGGCGTCGTTTTG TTCTGGAAGGTCGGTTGTGGAAAGGACTCTGTTTGAAAGAGTTTCCTGAGGEST: gi|18369371|gb|BJ201457.1|BJ201457
genomic: GCAGGACATCGCCAACGCCACTGGTGTCTGCCGCTCTTGGCGTCGTTTTGgtccgttgca ... caacatacagTTCTGGAAGGTCGGTTGTGGAAAGGACTCTGTTTGAAAGAGTTTCCTGAGG
EST: GCAGGACATCGCCAACGCCACTGGTGTCTGCCGCTCTTGGCGTCGTTTTG TTCTGGAAGGTCGGTTGTGGAAAGGACTCTGTTTGAAAGAGTTTCCTGAGG
genomic: GCAGGACATCGCCAACGCCACTGGTGTCTGCCGCTCTTGGCGTCGTTTTGgtccgttgca ... caacatacagTTCTGGAAGGTCGGTTGTGGAAAGGACTCTGTTTGAAAGAGTTTCCTGAGG
tatgtgttctttgcacactaaattcttatgaacctaatggtgtttcaacatacagTTCTGGAAGGTCGGTTGTGGAAAGGACTCTGTTTGAAAGAGTTTCCTGAGGTGAAGTTATTCGAGGAGGTCGCCGAGTTCGTTGAGCTAGACCAACCGAG
taaattcttatgaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aatattcaatattatccaatgttgaaatatttaatttaggcaagatatgtgttctttgcacactaaattcttatgaacctaatggtgtttcaacatacagTTCTGGAAGGTCGGTTGTGGAAAGGACTCTGTTTGAAAGAGTTTCCTGAGGTGAAGTTATTCGAGGAGGTCGCCGAGTTCGTTGAGCTAGACCAACCGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - -tgttgaa