1 5' 3' | 2 5' 3' |
gtatagccctccttctcgaattgtcctcgcatctcgaggctgtccacgtgaaagtgtcggtagcactgaaccgctctcgcaacacaacttagtggtttggccatcattcggaatatgcattcgtctagtagttggcaaggtcatgagaacgctttttacatctggttctgacgatgatatggttctgtgcttgcagACAGGCAAGCTCTACTACGTGAACAAGAGCTCTGGTGTGAGCAGCTTGGACAATCCCCGGAAGCGATGCACTACCGACCTATCACTCGCCCATGAGTTTC
species | Physcomitrella patens |
transcript | PP1S98_175V6.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: AATGCCTGGACCTCAAG ACAGGCAAGCTCTACTACGTGAACAAGAGCTCTGGTGTGAGCAGCTTGGACEST: gi|100375083|gb|BY949177.1|BY949177
genomic: AATGCCTGGACCTCAAGgtatagccct ... gtgcttgcagACAGGCAAGCTCTACTACGTGAACAAGAGCTCTGGTGTGAGCAGCTTGGAC
EST: CAGTGAGGAANCCCCTCC-TTCCGGCTGGGAGAAATGCCTGGACCTCANG ACAAGCNAGCTCTACTACGTGAACNAGAGCTCTGGTGTGAGCAGCTTGGACEST: gi|162198557|gb|FC373403.1|FC373403
genomic: CAGTGAGGAA-CCCCTCCCTTCCGGCTGGGAGAAATGCCTGGACCTCAAGgtatagccct ... gtgcttgcagACAGGCAAGCTCTACTACGTGAACAAGAGCTCTGGTGTGAGCAGCTTGGAC
EST: CCAGTGAGGAACCCCTCCCTTCCGGCTGGGAGAAATGCCTGGACCTCAAG ACAGGCAAGCTCTACTACGTGAACAAGAGCTCTGGTGTGAGCAGCTTGGACEST: gi|162222103|gb|FC397331.1|FC397331
genomic: CCAGTGAGGAACCCCTCCCTTCCGGCTGGGAGAAATGCCTGGACCTCAAGgtatagccct ... gtgcttgcagACAGGCAAGCTCTACTACGTGAACAAGAGCTCTGGTGTGAGCAGCTTGGAC
EST: CCAGTGAGGAACCCCTCCCTTCCGGCTGGGAGAAATGCCTGGACCTCAAG ACAGGCAAGCTCTACTACGTGAACAAGAGCTCTGGTGTGAGCAGCTTGGAC
genomic: CCAGTGAGGAACCCCTCCCTTCCGGCTGGGAGAAATGCCTGGACCTCAAGgtatagccct ... gtgcttgcagACAGGCAAGCTCTACTACGTGAACAAGAGCTCTGGTGTGAGCAGCTTGGAC
catgagaacgctttttacatctggttctgacgatgatatggttctgtgcttgcagACAGGCAAGCTCTACTACGTGAACAAGAGCTCTGGTGTGAGCAGCTTGGACAATCCCCGGAAGCGATGCACTACCGACCTATCACTCGCCCATGAGTTTC
ttctgac putative branch site (score: 3)
tttttacat TA-rich tract