1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...gggagaatgcagttttttgggaggtgtgcttttgaggttcctgcatgtaaggttgccatttctcaatagttggtttctcttgggttgtcctcgttttcagGAGACTGTTACCATTCCCACGCCAGGTTACTTCCGCAACAACTCTGGCTCTGCTACAGAGCCAAAGAGAG
species | Physcomitrella patens |
transcript | PP1S98_157V6.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TTCAGCGCGTATGTGCTGCTTGTGCGGATCCTTCCACCTCCTATGCTCTG GAGACTGTTACCATTCCCACGCCAGGTTACTTCCGCAACAACTCTGGCTCTEST: gi|18359772|gb|BJ191833.1|BJ191833
genomic: TTCAGCGCGTATGTGCTGCTTGTGCGGATCCTTCCACCTCCTATGCTCTGgtgggcacta ... tcgttttcagGAGACTGTTACCATTCCCACGCCAGGTTACTTCCGCAACAACTCTGGCTCT
EST: TTCAGCGCGTATGTGCTGCTTGTGCGGATCCTTCCACCTCCTATGCTCTG GAGACTGTTACCATTCCCACGCCAGGTTACTTCCGCAACAACTCTGGCTCTEST: gi|18343928|gb|BJ175966.1|BJ175966
genomic: TTCAGCGCGTATGTGCTGCTTGTGCGGATCCTTCCACCTCCTATGCTCTGgtgggcacta ... tcgttttcagGAGACTGTTACCATTCCCACGCCAGGTTACTTCCGCAACAACTCTGGCTCT
EST: TTCAGCGCGTATGTGCTGCTTGTGCGGATCCTTCCACCTCCTATGCTCTG GAGACTGTTACCATTCCCACGCCAGGTTACTTCCGCAACAACTCTGGCTCTEST: gi|18362739|gb|BJ194810.1|BJ194810
genomic: TTCAGCGCGTATGTGCTGCTTGTGCGGATCCTTCCACCTCCTATGCTCTGgtgggcacta ... tcgttttcagGAGACTGTTACCATTCCCACGCCAGGTTACTTCCGCAACAACTCTGGCTCT
EST: TTCAGCGCGTATGTGCTGCTTGTGCGGATCCTTCCACCTCCTATGCTCTG GAGACTGTTACCATTCCCACGCCAGGTTACTTCCGCAACAACTCTGGCTCTEST: gi|18352538|gb|BJ184592.1|BJ184592
genomic: TTCAGCGCGTATGTGCTGCTTGTGCGGATCCTTCCACCTCCTATGCTCTGgtgggcacta ... tcgttttcagGAGACTGTTACCATTCCCACGCCAGGTTACTTCCGCAACAACTCTGGCTCT
EST: TTCAGCGCGTATGTGCTGCTTGTGCGGATCCTTCCACCTCCTATGCTCTG GAGACTGTTACCATTCCCACGCCAGGTTACTTCCGCAACAACTCTGGCTCTEST: gi|18327513|gb|BJ159516.1|BJ159516
genomic: TTCAGCGCGTATGTGCTGCTTGTGCGGATCCTTCCACCTCCTATGCTCTGgtgggcacta ... tcgttttcagGAGACTGTTACCATTCCCACGCCAGGTTACTTCCGCAACAACTCTGGCTCT
EST: TTCAGCGCGTATGTGCTGCTTGTGCGGATCCTTCCACCTCCTATGCTCTG GAGACTGTTACCATTCCCACGCCAGGTTACTTCCGCAACAACTCTGGCTCT
genomic: TTCAGCGCGTATGTGCTGCTTGTGCGGATCCTTCCACCTCCTATGCTCTGgtgggcacta ... tcgttttcagGAGACTGTTACCATTCCCACGCCAGGTTACTTCCGCAACAACTCTGGCTCT
tgtaaggttgccatttctcaatagttggtttctcttgggttgtcctcgttttcagGAGACTGTTACCATTCCCACGCCAGGTTACTTCCGCAACAACTCTGGCTCTGCTACAGAGCCAAAGAGAG
ttgtcctcgttttc CT-rich tract
aatagtt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gggagaatgcagttttttgggaggtgtgcttttgaggttcctgcatgtaaggttgccatttctcaatagttggtttctcttgggttgtcctcgttttcagGAGACTGTTACCATTCCCACGCCAGGTTACTTCCGCAACAACTCTGGCTCTGCTACAGAGCCAAAGAGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA