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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATTTGAGAATTTATCAGTCCAGAACCTTCAATCCATGATTTCAAATTCCAGTACCTCGTCTCTACGATGCAACGACTCAATCAAGCTGGCGAATTTTCTCgtaatttactgatcccttttgataatctcatttcaaagtttacagtgtggcattaccgttttcacgtctgttgtcttgtataatgtgtctcatcttcgtc...

Basic information

species Physcomitrella patens
transcript PP1S98_155V6.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208392377|gb|DC904237.1|DC904237
EST:     GTACCTCGTCTCTACGATGCAACGACTCAATCAAGCTGGCGAATTTTCTC                         ACGGAAGGGGAGTTGAAGGAGTTACGAAGCATTTTCGCTCGAGCCTCCATG
genomic: GTACCTCGTCTCTACGATGCAACGACTCAATCAAGCTGGCGAATTTTCTCgtaatttact ... tgacaaacagACGGAAGGGGAGTTGAAGGAGTTACGAAGCATTTTCGCTCGAGCCTCCATG
EST: gi|100376561|gb|BY986226.1|BY986226
EST:     GTACCTCGTCTCTACGATGCAACGACTCAATCAAGCTGGCGAATTTTCTC                         ACGGAAGGGGAGTTGAAGGAGTTACGAAGCATTTTCGCTCGAGCCTCCATG
genomic: GTACCTCGTCTCTACGATGCAACGACTCAATCAAGCTGGCGAATTTTCTCgtaatttact ... tgacaaacagACGGAAGGGGAGTTGAAGGAGTTACGAAGCATTTTCGCTCGAGCCTCCATG
EST: gi|100366202|gb|BY967330.1|BY967330
EST:     GTACCTCGTCTCTACGATGCAACGACTCAATCAAGCTGGCGAATTTTCTC                         ACGGAAGGGGAGTTGAAGGAGTTACGAAGCATTTTCGCTCGAGCCTCCATG
genomic: GTACCTCGTCTCTACGATGCAACGACTCAATCAAGCTGGCGAATTTTCTCgtaatttact ... tgacaaacagACGGAAGGGGAGTTGAAGGAGTTACGAAGCATTTTCGCTCGAGCCTCCATG
EST: gi|100382617|gb|BY986884.1|BY986884
EST:     GTACCTCGTCTCTACGATGCAACGACTCAATCAAGCTGGCGAATTTTCTC                         ACGGAAGGGGAGTTGAAGGAGTTACGAAGCATTTTCGCTCGAGCCTCCATG
genomic: GTACCTCGTCTCTACGATGCAACGACTCAATCAAGCTGGCGAATTTTCTCgtaatttact ... tgacaaacagACGGAAGGGGAGTTGAAGGAGTTACGAAGCATTTTCGCTCGAGCCTCCATG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ATTTGAGAATTTATCAGTCCAGAACCTTCAATCCATGATTTCAAATTCCAGTACCTCGTCTCTACGATGCAACGACTCAATCAAGCTGGCGAATTTTCTCgtaatttactgatcccttttgataatctcatttcaaagtttacagtgtggcattaccgttttcacgtctgttgtcttgtataatgtgtctcatcttcgtc

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG