1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...gatagcagtagaaaacgctagttgcgttgtagaaattatcataacttgtaaaacgaactaggttatgtgagcaatttcttgtaaccttggattgttgcagGTTAGTGTGGCAAAAGTGCTTCTTGGAGCCGATGCAGCTTTTCAGTCAAGAGAAACTCCTCCGGCATTTTCCACACCCCCTCTTGCTGAAATTTCAACAT
species | Physcomitrella patens |
transcript | PP1S98_141V6.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: AGGAATCTGGTTCCGCTCTATACAATAGTCTCAGGGAATTCATTACTCAG GTTAGTGTGGCAAAAGTGCTTCTTGGAGCCGATGCAGCTTTTCAGTCAAGAEST: gi|162266973|gb|FC443048.1|FC443048
genomic: AGGAATCTGGTTCCGCTCTATACAATAGTCTCAGGGAATTCATTACTCAGgtgtgtgtgt ... attgttgcagGTTAGTGTGGCAAAAGTGCTTCTTGGAGCCGATGCAGCTTTTCAGTCAAGA
EST: AGGAATCTGGTTCCGCTCTATACAATAGTCTCAGGGAATTCATTACTCAG GTTAGTGTGGCAAAAGTGCTTCTTGGAGCCGATGCAGCTTTTCAGTCAAGAEST: gi|18352060|gb|BJ184113.1|BJ184113
genomic: AGGAATCTGGTTCCGCTCTATACAATAGTCTCAGGGAATTCATTACTCAGgtgtgtgtgt ... attgttgcagGTTAGTGTGGCAAAAGTGCTTCTTGGAGCCGATGCAGCTTTTCAGTCAAGA
EST: AGGAATCTGGTTCCGCTCTATACAATAGTCTCAGGGAATTCATTACTCAG GTTAGTGTGGCAAAAGTGCTTCTTGGAGCCGATGCAGCTTTTCAGEST: gi|100378826|gb|BY968708.1|BY968708
genomic: AGGAATCTGGTTCCGCTCTATACAATAGTCTCAGGGAATTCATTACTCAGgtgtgtgtgt ... attgttgcagGTTAGTGTGGCAAAAGTGCTTCTTGGAGCCGATGCAGCTTTTCAG
EST: AGGAATCTGGTTCCGCTCTATACAATAGTCTCAGGGAATTCATTACTCAG GTTAGTGTGGCAAAAGTGCTTCTTGGAGCCGATGCAGCTTTTCAGTCAAGAEST: gi|100378189|gb|BY949725.1|BY949725
genomic: AGGAATCTGGTTCCGCTCTATACAATAGTCTCAGGGAATTCATTACTCAGgtgtgtgtgt ... attgttgcagGTTAGTGTGGCAAAAGTGCTTCTTGGAGCCGATGCAGCTTTTCAGTCAAGA
EST: AGGAATCTGGTTCCGCTCTATACAATAGTCTCAGGGAATTCATTACTCAG GTTAGTGTGGCAAAAGTGCTTCTTGGAGCCGATGCAGCTTTTCAGTCAAGA
genomic: AGGAATCTGGTTCCGCTCTATACAATAGTCTCAGGGAATTCATTACTCAGgtgtgtgtgt ... attgttgcagGTTAGTGTGGCAAAAGTGCTTCTTGGAGCCGATGCAGCTTTTCAGTCAAGA
ttgtaaaacgaactaggttatgtgagcaatttcttgtaaccttggattgttgcagGTTAGTGTGGCAAAAGTGCTTCTTGGAGCCGATGCAGCTTTTCAGTCAAGAGAAACTCCTCCGGCATTTTCCACACCCCCTCTTGCTGAAATTTCAACAT
ttgtaac putative branch site (score: 9)
aatttctt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gatagcagtagaaaacgctagttgcgttgtagaaattatcataacttgtaaaacgaactaggttatgtgagcaatttcttgtaaccttggattgttgcagGTTAGTGTGGCAAAAGTGCTTCTTGGAGCCGATGCAGCTTTTCAGTCAAGAGAAACTCCTCCGGCATTTTCCACACCCCCTCTTGCTGAAATTTCAACAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC