1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
CATTGCGCGCTGGGCCAGAGCGTGCTTCTGTCTTCGCGTCGCGCTTCTGTGATGTCTGGCGTCTCTCTTCCTTCCCTCGCCAGCTCTAGTTACCGAACAGgtcagttatggctcttctgagtcttgagagtggaatgtggtcacatgcgcaatgtcgtttggatgcgtgtgtcaatagccatggtcggtttaacatcatg...
species | Physcomitrella patens |
transcript | PP1S98_136V6.2 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: GATGTCTGGCGTCTCTCTTCCTTCCCTCGCCAGCTCTAGTTACCGAACAG ATGCGAAAAGGTCTTTGACGATTGTCGCTGCTAAAGCTACCAAGGAGGCTGEST: gi|162210330|gb|FC386210.1|FC386210
genomic: GATGTCTGGCGTCTCTCTTCCTTCCCTCGCCAGCTCTAGTTACCGAACAGgtcagttatg ... ctactagcagATGCGAAAAGGTCTTTGACGATTGTCGCTGCTAAAGCTACCAAGGAGGCTG
EST: GATGTCTGGCGTCTCTCTTCCTTCCCTCGCCAGCTCTAGTTACCGAACAG ATGCGAAAAGGTCTTTGACGATTGTCGCTGCTAAAGCTACCAATGAGGCTGEST: gi|67574583|gb|BJ947407.1|BJ947407
genomic: GATGTCTGGCGTCTCTCTTCCTTCCCTCGCCAGCTCTAGTTACCGAACAGgtcagttatg ... ctactagcagATGCGAAAAGGTCTTTGACGATTGTCGCTGCTAAAGCTACCAAGGAGGCTG
EST: GATGTCTGGCGTCTCTCTTCCTTCCCTCGCCAGCTCTAGTTACCGAACAG ATGCGAAAAGGTCTTTGACGATTGTCGCTGCTAAAGCTACCAAGGAGGCTGEST: gi|67701028|gb|BJ961261.1|BJ961261
genomic: GATGTCTGGCGTCTCTCTTCCTTCCCTCGCCAGCTCTAGTTACCGAACAGgtcagttatg ... ctactagcagATGCGAAAAGGTCTTTGACGATTGTCGCTGCTAAAGCTACCAAGGAGGCTG
EST: GATGTCTGGCGTCTCTCTTCCTTCCCTCGCCAGCTCTAGTTACCGAACAG ATGCGAAAAGGTCTTTGACGATTGTCGCTGCTAAAGCTACCAAGGAGGCTGEST: gi|162250085|gb|FC427394.1|FC427394
genomic: GATGTCTGGCGTCTCTCTTCCTTCCCTCGCCAGCTCTAGTTACCGAACAGgtcagttatg ... ctactagcagATGCGAAAAGGTCTTTGACGATTGTCGCTGCTAAAGCTACCAAGGAGGCTG
EST: GATGTCTGGCGTCTCTCTTCCTTCCCTCGCCAGCTCTAGTTACCGAACAG ATGCGAAAAGGTCTTTGACGATTGTCGCTGCTAAAGCTACCAATGAGGCTGEST: gi|67571413|gb|BJ944237.1|BJ944237
genomic: GATGTCTGGCGTCTCTCTTCCTTCCCTCGCCAGCTCTAGTTACCGAACAGgtcagttatg ... ctactagcagATGCGAAAAGGTCTTTGACGATTGTCGCTGCTAAAGCTACCAAGGAGGCTG
EST: GATGTCTGGCGTCTCTCTTCCTTCCCTCGCCAGCTCTAGTTACCGAACAG ATGCGAAAAGGTCTTTGACGATTGTCGCTGCTAAAGCTACCAAGGAGGCTGEST: gi|162250084|gb|FC427393.1|FC427393
genomic: GATGTCTGGCGTCTCTCTTCCTTCCCTCGCCAGCTCTAGTTACCGAACAGgtcagttatg ... ctactagcagATGCGAAAAGGTCTTTGACGATTGTCGCTGCTAAAGCTACCAAGGAGGCTG
EST: GATGTCTGGCGTCTCTCTTCCTTCCCTCGCCAGCTCTAGTTACCGAACAG ATGCGAAAAGGTCTTTGACGATTGTCGCTGCTAAAGCTACCAATGAGGCTGEST: gi|162276312|gb|FC452419.1|FC452419
genomic: GATGTCTGGCGTCTCTCTTCCTTCCCTCGCCAGCTCTAGTTACCGAACAGgtcagttatg ... ctactagcagATGCGAAAAGGTCTTTGACGATTGTCGCTGCTAAAGCTACCAAGGAGGCTG
EST: GATGTCTGGCGTCTCTCTTCCTTCCCTCGCCAGCTCTAGTTACCGAACAG ATGCGAAAAGGTCTTTGACGATTGTCGCTGCTAAAGCTACCAAGGAGGCTGEST: gi|162223989|gb|FC400347.1|FC400347
genomic: GATGTCTGGCGTCTCTCTTCCTTCCCTCGCCAGCTCTAGTTACCGAACAGgtcagttatg ... ctactagcagATGCGAAAAGGTCTTTGACGATTGTCGCTGCTAAAGCTACCAAGGAGGCTG
EST: GATGTCTGGCGTCTCTCTTCCTTCCCTCGCCAGCTCTAGTTACCGAACAG ATGCGAAAAGGTCTTTGACGATTGTCGCTGCTAAAGCTACCAATGAGGCTGEST: gi|162226371|gb|FC403287.1|FC403287
genomic: GATGTCTGGCGTCTCTCTTCCTTCCCTCGCCAGCTCTAGTTACCGAACAGgtcagttatg ... ctactagcagATGCGAAAAGGTCTTTGACGATTGTCGCTGCTAAAGCTACCAAGGAGGCTG
EST: GATGTCTGGCGTCTCTCTTCCTTCCCTCGCCAGCTCTAGTTACCGAACAG ATGCGAAAAGGTCTTTGACGATTGTCGCTGCTAAAGCTACCAATGAGGCTGEST: gi|162236290|gb|FC411409.1|FC411409
genomic: GATGTCTGGCGTCTCTCTTCCTTCCCTCGCCAGCTCTAGTTACCGAACAGgtcagttatg ... ctactagcagATGCGAAAAGGTCTTTGACGATTGTCGCTGCTAAAGCTACCAAGGAGGCTG
EST: GATGTCTGGCGTCTCTCTTCCTTCCCTCGCCAGCTGTAGTTACCGAACAG ATGCGAAAAGGTCTTTGACGATTGTCGCTGCTAAAGCTACCAATGAGGCTGEST: gi|19790227|gb|BQ041763.1|BQ041763
genomic: GATGTCTGGCGTCTCTCTTCCTTCCCTCGCCAGCTCTAGTTACCGAACAGgtcagttatg ... ctactagcagATGCGAAAAGGTCTTTGACGATTGTCGCTGCTAAAGCTACCAAGGAGGCTG
EST: GATGTCTGGCGTCTCTCTTCCTTCCCTCGCCAGCTCTAGTTACCGAACAG ATGCGAAAAGGTCTTTGACGATTGTCGCTGCTAAAGCTACCAAGGAGGCTGEST: gi|162261462|gb|FC438298.1|FC438298
genomic: GATGTCTGGCGTCTCTCTTCCTTCCCTCGCCAGCTCTAGTTACCGAACAGgtcagttatg ... ctactagcagATGCGAAAAGGTCTTTGACGATTGTCGCTGCTAAAGCTACCAAGGAGGCTG
EST: GATGTCTGGCGTCTCTCTTCCTTCCCTCGCCAGCTCTAGTTACCGAACAG ATGCGAAAAGGTCTTTGACGATTGTCGCTGCTAAAGCTACCAAGGAGGCTGEST: gi|162226370|gb|FC403286.1|FC403286
genomic: GATGTCTGGCGTCTCTCTTCCTTCCCTCGCCAGCTCTAGTTACCGAACAGgtcagttatg ... ctactagcagATGCGAAAAGGTCTTTGACGATTGTCGCTGCTAAAGCTACCAAGGAGGCTG
EST: GATGTCTGGCGTCTCTCTTCCTTCCCTCGCCAGCTCTAGTTACCGAACAG ATGCGAAAAGGTCTTTGACGATTGTCGCTGCTAAAGCTACCAATGAGGCTGEST: gi|37847166|gb|BJ605174.1|BJ605174
genomic: GATGTCTGGCGTCTCTCTTCCTTCCCTCGCCAGCTCTAGTTACCGAACAGgtcagttatg ... ctactagcagATGCGAAAAGGTCTTTGACGATTGTCGCTGCTAAAGCTACCAAGGAGGCTG
EST: GATGTCTGGCGTCTCTCTTCCTTCCCTCGCCAGCTCTAGTTACCGAACAG ATGCGAAAAGGTCTTTGACGATTGTCGCTGCTAAAGCTACCAAGGAGGCTGEST: gi|67695443|gb|BJ955676.1|BJ955676
genomic: GATGTCTGGCGTCTCTCTTCCTTCCCTCGCCAGCTCTAGTTACCGAACAGgtcagttatg ... ctactagcagATGCGAAAAGGTCTTTGACGATTGTCGCTGCTAAAGCTACCAAGGAGGCTG
EST: GATGTCTGGCGTCTCTCTTCCTTCCCTCGCCAGCTCTAGTTACCGAACAG ATGCGAAAAGGTCTTTGACGATTGTCGCTGCTAAAGCTACCAAGGAGGCTGEST: gi|162216551|gb|FC392448.1|FC392448
genomic: GATGTCTGGCGTCTCTCTTCCTTCCCTCGCCAGCTCTAGTTACCGAACAGgtcagttatg ... ctactagcagATGCGAAAAGGTCTTTGACGATTGTCGCTGCTAAAGCTACCAAGGAGGCTG
EST: GATGTCTGGCGTCTCTCTTCCTTCCCTCGCCAGCTCTAGTTACCGAACAG ATGCGAAAAGGTCTTTGACGATTGTCGCTGCTAAAGCTACCAATGAGGCTGEST: gi|162246712|gb|FC424694.1|FC424694
genomic: GATGTCTGGCGTCTCTCTTCCTTCCCTCGCCAGCTCTAGTTACCGAACAGgtcagttatg ... ctactagcagATGCGAAAAGGTCTTTGACGATTGTCGCTGCTAAAGCTACCAAGGAGGCTG
EST: GATGTCTGGCGTCTCTCTTCCTTCCCTCGCCAGCTCTAGTTACCGAACAG ATGCGAAAAGGTCTTTGACGATTGTCGCTGCTAAAGCTACCAATGAGGCTGEST: gi|162269839|gb|FC445889.1|FC445889
genomic: GATGTCTGGCGTCTCTCTTCCTTCCCTCGCCAGCTCTAGTTACCGAACAGgtcagttatg ... ctactagcagATGCGAAAAGGTCTTTGACGATTGTCGCTGCTAAAGCTACCAAGGAGGCTG
EST: GATGTCTGGCGTCTCTCTTCCTTCCCTCGCCAGCTCTAGTTACCGAACAG ATGCGAAAAGGTCTTTGACGATTGTCGCTGCTAAAGCTACCAAGGAGGCTGEST: gi|67694743|gb|BJ954976.1|BJ954976
genomic: GATGTCTGGCGTCTCTCTTCCTTCCCTCGCCAGCTCTAGTTACCGAACAGgtcagttatg ... ctactagcagATGCGAAAAGGTCTTTGACGATTGTCGCTGCTAAAGCTACCAAGGAGGCTG
EST: GATGTCTGGCGTCTCTCTTCCTTCCCTCGCCAGCTCTAGTTACCGAACAG ATGCGAAAAGGTCTTTGACGATTGTCGCTGCTAAAGCTACCAAGGAGGCTGEST: gi|162210329|gb|FC386209.1|FC386209
genomic: GATGTCTGGCGTCTCTCTTCCTTCCCTCGCCAGCTCTAGTTACCGAACAGgtcagttatg ... ctactagcagATGCGAAAAGGTCTTTGACGATTGTCGCTGCTAAAGCTACCAAGGAGGCTG
EST: GATGTCTGGCGTCTCTCTTCCTTCCCTCGCCAGCTCTAGTTACCGAACAG ATGCGAAAAGGTCTTTGACGATTGTCGCTGCTAAAGCTACCAATGAGGCTGEST: gi|67701356|gb|BJ961589.1|BJ961589
genomic: GATGTCTGGCGTCTCTCTTCCTTCCCTCGCCAGCTCTAGTTACCGAACAGgtcagttatg ... ctactagcagATGCGAAAAGGTCTTTGACGATTGTCGCTGCTAAAGCTACCAAGGAGGCTG
EST: GATGTCTGGCGTCTCTCTTCCTTCCCTCGCCAGCTCTAGTTACCGAACAG ATGCGAAAAGGTCTTTGACGATTGTCGCTGCTAAAGCTACCAAGGAGGCTG
genomic: GATGTCTGGCGTCTCTCTTCCTTCCCTCGCCAGCTCTAGTTACCGAACAGgtcagttatg ... ctactagcagATGCGAAAAGGTCTTTGACGATTGTCGCTGCTAAAGCTACCAAGGAGGCTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CATTGCGCGCTGGGCCAGAGCGTGCTTCTGTCTTCGCGTCGCGCTTCTGTGATGTCTGGCGTCTCTCTTCCTTCCCTCGCCAGCTCTAGTTACCGAACAGgtcagttatggctcttctgagtcttgagagtggaatgtggtcacatgcgcaatgtcgtttggatgcgtgtgtcaatagccatggtcggtttaacatcatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC