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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGCCATCAAAGCTGCGCAGCTTGGATTTAAGACGACTTGTATCGAGGGCCGAGGCTCCCTAGGAGGCACCTGCCTGAACGTCGGATGTATTCCCTCCAAGgtatgttttatcgctcatggagcgattgaatcggcggtgggaaagagtgcgttaactccttctattgttgcagagtttacgaaatccttaggcgtgaata...

Basic information

species Physcomitrella patens
transcript PP1S98_132V6.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208369449|gb|DC931687.1|DC931687
EST:     GAGGCTCCCTAGGAGGCACCTGCCTGAACGTCGGATGTATTCCCTCCAAG                         GCTCTTCTTCAGTCGTCTCACATGTATCACGAAGCCCAGCATAGCTTTGCA
genomic: GAGGCTCCCTAGGAGGCACCTGCCTGAACGTCGGATGTATTCCCTCCAAGgtatgtttta ... ttccgttcagGCTCTTCTTCAGTCGTCTCACATGTATCACGAAGCCCAGCATAGCTTTGCA
EST: gi|208362572|gb|DC931021.1|DC931021
EST:     GAGGCTCCCTAGGAGGCACCTGCCTGAACGTCGGATGTATTCCCTCCAAG                         GCTCTTCTTCAGTCGTCTCACATGTATCACGAAGCCCAGCATAGCTTTGCA
genomic: GAGGCTCCCTAGGAGGCACCTGCCTGAACGTCGGATGTATTCCCTCCAAGgtatgtttta ... ttccgttcagGCTCTTCTTCAGTCGTCTCACATGTATCACGAAGCCCAGCATAGCTTTGCA
EST: gi|208368290|gb|DC935659.1|DC935659
EST:     GAGGCTCCCTAGGAGGCACCTGCCTGAACGTCGGATGTATTCCCTCCAAG                         GCTCTTCTTCAGTCGTCTCACATGTATCACGAAGCCCAGCATAGCTTTGCA
genomic: GAGGCTCCCTAGGAGGCACCTGCCTGAACGTCGGATGTATTCCCTCCAAGgtatgtttta ... ttccgttcagGCTCTTCTTCAGTCGTCTCACATGTATCACGAAGCCCAGCATAGCTTTGCA
EST: gi|162261606|gb|FC438039.1|FC438039
EST:     GAGGCTCCCTAGGAGGCACCTGCCTGAACGTCGGATGTATTCCCTCCAAG                         GCTCTTCTTCAGTCGTCTCACATGTATCACGAAGCCCAGCATAGCTTTGCA
genomic: GAGGCTCCCTAGGAGGCACCTGCCTGAACGTCGGATGTATTCCCTCCAAGgtatgtttta ... ttccgttcagGCTCTTCTTCAGTCGTCTCACATGTATCACGAAGCCCAGCATAGCTTTGCA
EST: gi|100400514|gb|BY954515.1|BY954515
EST:     GAGGCTCCCTAGGAGGCACCTGCCTGAACGTCGGATGTATTCCCTCCAAG                         GCTCTTCTTCAGTCGTCTCACATGTATCACGAAGCCCAGCATAGCTTTGCA
genomic: GAGGCTCCCTAGGAGGCACCTGCCTGAACGTCGGATGTATTCCCTCCAAGgtatgtttta ... ttccgttcagGCTCTTCTTCAGTCGTCTCACATGTATCACGAAGCCCAGCATAGCTTTGCA
EST: gi|162238536|gb|FC415948.1|FC415948
EST:     GAGGCTCCCTAGGAGGCACCTGCCTGAATGTCGGATGTATTCCCTCCAAG                         GCTCTTCTTCAGTCGTCTCACATGTATCACGAAGCCCAGCATAGCTTTGCA
genomic: GAGGCTCCCTAGGAGGCACCTGCCTGAACGTCGGATGTATTCCCTCCAAGgtatgtttta ... ttccgttcagGCTCTTCTTCAGTCGTCTCACATGTATCACGAAGCCCAGCATAGCTTTGCA
EST: gi|208355745|gb|DC910615.1|DC910615
EST:     GAGGCTCCCTAGGAGGCACCTGCCTGAACGTCGGATGTATTCCCTCCAAG                         GCTCTTCTTCAGTCGTCTCACATGTATCACGAAGCCCAGCATAGCTTTGCA
genomic: GAGGCTCCCTAGGAGGCACCTGCCTGAACGTCGGATGTATTCCCTCCAAGgtatgtttta ... ttccgttcagGCTCTTCTTCAGTCGTCTCACATGTATCACGAAGCCCAGCATAGCTTTGCA
EST: gi|162209134|gb|FC385353.1|FC385353
EST:     GAGGCTCCCTAGGAGGCACCTGCCTGAATGTCGGATGTATTCCCTCCAAG                         GCTCTTCTTCAGTCGTCTCACATGTATCACGAAGCCCAGCATAGCTTTGCA
genomic: GAGGCTCCCTAGGAGGCACCTGCCTGAACGTCGGATGTATTCCCTCCAAGgtatgtttta ... ttccgttcagGCTCTTCTTCAGTCGTCTCACATGTATCACGAAGCCCAGCATAGCTTTGCA
EST: gi|67716921|gb|BJ967180.1|BJ967180
EST:     GAGGCTCCCTAGGAGGCACCTGCCTGAACGTCGGATGTATTCCCTCCAAG                         GCTCTTCTTCAGTCGTCTCACATGTATCACGAAGCCCAGCATAGCTTTGCA
genomic: GAGGCTCCCTAGGAGGCACCTGCCTGAACGTCGGATGTATTCCCTCCAAGgtatgtttta ... ttccgttcagGCTCTTCTTCAGTCGTCTCACATGTATCACGAAGCCCAGCATAGCTTTGCA
EST: gi|162155288|gb|FC331732.1|FC331732
EST:     GAGGCTCCCTAGGAGGCACCTGCCTGAATGTCGGATGTATTCCCTCCAAG                         GCTCTTCTTCAGTCGTCTCACATGTATCACGAAGCCCAGCATAGCTTTGCA
genomic: GAGGCTCCCTAGGAGGCACCTGCCTGAACGTCGGATGTATTCCCTCCAAGgtatgtttta ... ttccgttcagGCTCTTCTTCAGTCGTCTCACATGTATCACGAAGCCCAGCATAGCTTTGCA
EST: gi|162201704|gb|FC377482.1|FC377482
EST:     GAGGCTCCCTAGGAGGCACCTGCCTGAATGTCGGATGTATTCCCTCCAAG                         GCTCTTCTTCAGTCGTCTCACATGTATCACGAAGCCCAGCATAGCTTTGCA
genomic: GAGGCTCCCTAGGAGGCACCTGCCTGAACGTCGGATGTATTCCCTCCAAGgtatgtttta ... ttccgttcagGCTCTTCTTCAGTCGTCTCACATGTATCACGAAGCCCAGCATAGCTTTGCA
EST: gi|100445105|gb|BY964404.1|BY964404
EST:     GAGGCTCCCTAGGAGGCACCTGCCTGAACGTCGGATGTATTCCCTCCAAG                         GCTCTTCTTCAGTCGTCTCACATGTATCACGAAGCCCAGCATAGCTTTGCA
genomic: GAGGCTCCCTAGGAGGCACCTGCCTGAACGTCGGATGTATTCCCTCCAAGgtatgtttta ... ttccgttcagGCTCTTCTTCAGTCGTCTCACATGTATCACGAAGCCCAGCATAGCTTTGCA
EST: gi|162175998|gb|FC351012.1|FC351012
EST:     GAGGCTCCCTAGGAGGCACCTGCCTGAATGTCGGATGTATTCCCTCCAAG                         GCTCTTCTTCAGTCGTCTCACATGTATCACGAAGCCCAGCATAGCTTTGCA
genomic: GAGGCTCCCTAGGAGGCACCTGCCTGAACGTCGGATGTATTCCCTCCAAGgtatgtttta ... ttccgttcagGCTCTTCTTCAGTCGTCTCACATGTATCACGAAGCCCAGCATAGCTTTGCA
EST: gi|100410015|gb|BY974366.1|BY974366
EST:     GAGGCTCCCTAGGAGGCACCTGCCTGAACGTCGGATGTATTCCCTCCAAG                         GCTCTTCTTCAGTCGTCTCACATGTATCACGAAGCCCAGCATAGCTTTGCA
genomic: GAGGCTCCCTAGGAGGCACCTGCCTGAACGTCGGATGTATTCCCTCCAAGgtatgtttta ... ttccgttcagGCTCTTCTTCAGTCGTCTCACATGTATCACGAAGCCCAGCATAGCTTTGCA
EST: gi|100374614|gb|BY985856.1|BY985856
EST:     GAGGCTCCCTAGGAGGCACCTGCCTGAACGTCGGATGTATTCCCTCCAAG                         GCTCTTCTTCAGTCGGCTCACATGTATCACGAAGCCCAGCATAGCTTTGCA
genomic: GAGGCTCCCTAGGAGGCACCTGCCTGAACGTCGGATGTATTCCCTCCAAGgtatgtttta ... ttccgttcagGCTCTTCTTCAGTCGTCTCACATGTATCACGAAGCCCAGCATAGCTTTGCA
EST: gi|162178250|gb|FC354656.1|FC354656
EST:     GAGGCTCCCTAGGAGGCACCTGCCTGAATGTCGGATGTATTCCCTCCAAG                         GCTCTTCTTCAGTCGTCTCACATGTATCACGAAGCCCAGCATAGCTTTGCA
genomic: GAGGCTCCCTAGGAGGCACCTGCCTGAACGTCGGATGTATTCCCTCCAAGgtatgtttta ... ttccgttcagGCTCTTCTTCAGTCGTCTCACATGTATCACGAAGCCCAGCATAGCTTTGCA
EST: gi|67508469|gb|BJ941335.1|BJ941335
EST:     GAGGCTCCCTAGGAGGCACCTGCCTGAACGTCGGATGTATTCCCTCCAAG                         GCTCTTCTTCAGTCGTCTCACATGTATCACGAAGCCCAGCATAGCTTTGCA
genomic: GAGGCTCCCTAGGAGGCACCTGCCTGAACGTCGGATGTATTCCCTCCAAGgtatgtttta ... ttccgttcagGCTCTTCTTCAGTCGTCTCACATGTATCACGAAGCCCAGCATAGCTTTGCA
EST: gi|100415942|gb|BY957000.1|BY957000
EST:     GAGGCTCCCTAGGAGGCACCTGCCTGAACGTCGGATGTATTCCCTCCAAG                         GCTCTTCTTCAGTCGTCTCACATGTATCACGAAGCCCAGCATAGCTTTGCA
genomic: GAGGCTCCCTAGGAGGCACCTGCCTGAACGTCGGATGTATTCCCTCCAAGgtatgtttta ... ttccgttcagGCTCTTCTTCAGTCGTCTCACATGTATCACGAAGCCCAGCATAGCTTTGCA
EST: gi|100406284|gb|BY991631.1|BY991631
EST:     GAGGCTCCCTAGGAGGCACCTGCCTGAACGTCGGATGTATTCCCTCCAAG                         GCTCTTCTTCAGTCGTCTCACATGTATCACGAAGCCCAGCATAGCTTTGCA
genomic: GAGGCTCCCTAGGAGGCACCTGCCTGAACGTCGGATGTATTCCCTCCAAGgtatgtttta ... ttccgttcagGCTCTTCTTCAGTCGTCTCACATGTATCACGAAGCCCAGCATAGCTTTGCA
EST: gi|100443609|gb|BY982036.1|BY982036
EST:     GAGGCTCCCTAGGAGGCACCTGCCTGAACGTCGGATGTATTCCCTCCAAG                         GCTCTTCTTCAGTCGTCTCACATGTATCACGAAGCCCAGCATAGCTTTGCA
genomic: GAGGCTCCCTAGGAGGCACCTGCCTGAACGTCGGATGTATTCCCTCCAAGgtatgtttta ... ttccgttcagGCTCTTCTTCAGTCGTCTCACATGTATCACGAAGCCCAGCATAGCTTTGCA
EST: gi|162184329|gb|FC360531.1|FC360531
EST:     GAGGCTCCCTAGGAGGCACCTGCCTGAATGTCGGATGTATTCCCTCCAAG                         GCTCTTCTTCAGTCGTCTCACATGTATCACGAAGCCCAGCATAGCTTTGCA
genomic: GAGGCTCCCTAGGAGGCACCTGCCTGAACGTCGGATGTATTCCCTCCAAGgtatgtttta ... ttccgttcagGCTCTTCTTCAGTCGTCTCACATGTATCACGAAGCCCAGCATAGCTTTGCA
EST: gi|162174144|gb|FC350347.1|FC350347
EST:     GAGGCTCCCTAGGAGGCACCTGCCTGAATGTCGGATGTATTCCCTCCAAG                         GCTCTTCTTCAGTCGTCTCACATGTATCACGAAGCCCAGCATAGCTTTGCA
genomic: GAGGCTCCCTAGGAGGCACCTGCCTGAACGTCGGATGTATTCCCTCCAAGgtatgtttta ... ttccgttcagGCTCTTCTTCAGTCGTCTCACATGTATCACGAAGCCCAGCATAGCTTTGCA
EST: gi|208369400|gb|DC936089.1|DC936089
EST:     GAGGCTCCCTAGGAGGCACCTGCCTGAACGTCGGATGTATTCCCTCCAAG                         GCTCTTCTTCAGTCGTCTCACATGTATCACGAAGCCCAGCATAGCTTTGCA
genomic: GAGGCTCCCTAGGAGGCACCTGCCTGAACGTCGGATGTATTCCCTCCAAGgtatgtttta ... ttccgttcagGCTCTTCTTCAGTCGTCTCACATGTATCACGAAGCCCAGCATAGCTTTGCA
EST: gi|100395835|gb|BY972157.1|BY972157
EST:     GAGGCTCCCTAGGAGGCACCTGCCTGAACGTCGGATGTATTCCCTCCAAG                         GCTCTTCTTCAGTCGTCTCACATGTATCACGAAGCCCAGCATAGCTTTGCA
genomic: GAGGCTCCCTAGGAGGCACCTGCCTGAACGTCGGATGTATTCCCTCCAAGgtatgtttta ... ttccgttcagGCTCTTCTTCAGTCGTCTCACATGTATCACGAAGCCCAGCATAGCTTTGCA
EST: gi|100380818|gb|BY986773.1|BY986773
EST:     GAGGCTCCCTAGGAGGCACCTGCCTGAACGTCGGATGTATTCCCTCCAAG                         GCTCTTCTTCAGTCGTCTCACATGTATCACGAAGCCCAGCATAGCTTTGCA
genomic: GAGGCTCCCTAGGAGGCACCTGCCTGAACGTCGGATGTATTCCCTCCAAGgtatgtttta ... ttccgttcagGCTCTTCTTCAGTCGTCTCACATGTATCACGAAGCCCAGCATAGCTTTGCA
EST: gi|100389882|gb|BY971234.1|BY971234
EST:     GAGGCTCCCTAGGAGGCACCTGCCTGAACGTCGGATGTATTCCCTCCAAG                         GCTCTTCTTCAGTCGTCTCACATGTATCACGAAGCCCAGCATAGCTTTGCA
genomic: GAGGCTCCCTAGGAGGCACCTGCCTGAACGTCGGATGTATTCCCTCCAAGgtatgtttta ... ttccgttcagGCTCTTCTTCAGTCGTCTCACATGTATCACGAAGCCCAGCATAGCTTTGCA
EST: gi|100386166|gb|BY970105.1|BY970105
EST:     GAGGCTCCCTAGGAGGCACCTGCCTGAACGTCGGATGTATTCCCTCCAAG                         GCTCTTCTTCAGTCGTCTCACATGTATCACGAAGCCCAGCATAGCTTTGCA
genomic: GAGGCTCCCTAGGAGGCACCTGCCTGAACGTCGGATGTATTCCCTCCAAGgtatgtttta ... ttccgttcagGCTCTTCTTCAGTCGTCTCACATGTATCACGAAGCCCAGCATAGCTTTGCA
EST: gi|100437749|gb|BY979809.1|BY979809
EST:     GAGGCTCCCTAGGAGGCACCTGCCTGAACGTCGGATGTATTCCCTCCAAG                         GCTCTTCTTCAGTCGTCTCACATGTATCACGAAGCCCAGCATAGCTTTGCA
genomic: GAGGCTCCCTAGGAGGCACCTGCCTGAACGTCGGATGTATTCCCTCCAAGgtatgtttta ... ttccgttcagGCTCTTCTTCAGTCGTCTCACATGTATCACGAAGCCCAGCATAGCTTTGCA
EST: gi|100396515|gb|BY990163.1|BY990163
EST:     GAGGCTCCCTAGGAGGCACCTGCCTGAACGTCGGATGTATTCCCTCCAAG                         GCTCTTCTTCAGTCGTCTCACATGTATCACGAAGCCCAGCATAGCTTTGCA
genomic: GAGGCTCCCTAGGAGGCACCTGCCTGAACGTCGGATGTATTCCCTCCAAGgtatgtttta ... ttccgttcagGCTCTTCTTCAGTCGTCTCACATGTATCACGAAGCCCAGCATAGCTTTGCA
EST: gi|208370696|gb|DC936156.1|DC936156
EST:     GAGGCTCCCTAGGAGGCACCTGCCTGAACGTCGGATGTATTCCCTCCAAG                         GCTCTTCTTCAGTCGTCTCACATGTATCACGAAGCCCAGCATAGCTTTGCA
genomic: GAGGCTCCCTAGGAGGCACCTGCCTGAACGTCGGATGTATTCCCTCCAAGgtatgtttta ... ttccgttcagGCTCTTCTTCAGTCGTCTCACATGTATCACGAAGCCCAGCATAGCTTTGCA
EST: gi|162171392|gb|FC347278.1|FC347278
EST:     GAGGCTCCCTAGGAGGCACCTGCCTGAATGTCGGATGTATTCCCTCCAAG                         GCTCTTCTTCAGTCGTCTCACATGTATCACGAAGCCCAGCATAGCTTTGCA
genomic: GAGGCTCCCTAGGAGGCACCTGCCTGAACGTCGGATGTATTCCCTCCAAGgtatgtttta ... ttccgttcagGCTCTTCTTCAGTCGTCTCACATGTATCACGAAGCCCAGCATAGCTTTGCA
EST: gi|208392715|gb|DC934031.1|DC934031
EST:     GAGGCTCCCTAGGAGGCACCTGCCTGAACGTCGGATGTATTCCCTCCAAG                         GCTCTTCTTCAGTCGTCTCACATGTATCACGAAGCCCAGCATAGCTTTGCA
genomic: GAGGCTCCCTAGGAGGCACCTGCCTGAACGTCGGATGTATTCCCTCCAAGgtatgtttta ... ttccgttcagGCTCTTCTTCAGTCGTCTCACATGTATCACGAAGCCCAGCATAGCTTTGCA
EST: gi|208384705|gb|DC907136.1|DC907136
EST:     GAGGCTCCCTAGGAGGCACCTGCCTGAACGTCGGATGTATTCCCTCCAAG                         GCTCTTCTTCAGTCGTCTCACATGTATCACGAAGCCCAGCATAGCTTTGCA
genomic: GAGGCTCCCTAGGAGGCACCTGCCTGAACGTCGGATGTATTCCCTCCAAGgtatgtttta ... ttccgttcagGCTCTTCTTCAGTCGTCTCACATGTATCACGAAGCCCAGCATAGCTTTGCA
EST: gi|162194232|gb|FC368493.1|FC368493
EST:     GAGGCTCCCTAGGAGGCACCTGCCTGAATGTCGGATGTATTCCCTCCAAG                         GCTCTTCTTCAGTCGTCTCACATGTATCACGAAGCCCAGCATAGCTTTGCA
genomic: GAGGCTCCCTAGGAGGCACCTGCCTGAACGTCGGATGTATTCCCTCCAAGgtatgtttta ... ttccgttcagGCTCTTCTTCAGTCGTCTCACATGTATCACGAAGCCCAGCATAGCTTTGCA
EST: gi|208393673|gb|DC907824.1|DC907824
EST:     GAGGCTCCCTAGGAGGCACCTGCCTGAACGTCGGATGTATTCCCTCCAAG                         GCTCTTCTTCAGTCGTCTCACATGTATCACGAAGCCCAGCATAGCTTTGCA
genomic: GAGGCTCCCTAGGAGGCACCTGCCTGAACGTCGGATGTATTCCCTCCAAGgtatgtttta ... ttccgttcagGCTCTTCTTCAGTCGTCTCACATGTATCACGAAGCCCAGCATAGCTTTGCA
EST: gi|162256600|gb|FC432910.1|FC432910
EST:     GAGGCTCCCTAGGAGGCACCTGCCTGAACGTCGGATGTATTCCCTCCAAG                         GCTCTTCTTCAGTCGTCTCACATGTATCACGAAGCCCAGCATAGCTTTGCA
genomic: GAGGCTCCCTAGGAGGCACCTGCCTGAACGTCGGATGTATTCCCTCCAAGgtatgtttta ... ttccgttcagGCTCTTCTTCAGTCGTCTCACATGTATCACGAAGCCCAGCATAGCTTTGCA
EST: gi|208400115|gb|DC904763.1|DC904763
EST:     GAGGCTCCCTAGGAGGCACCTGCCTGAACGTCGGATGTATTCCCTCCAAG                         GCTCTTCTTCAGTCGTCTCACATGTATCACGAAGCCCAGCATAGCTTTGCA
genomic: GAGGCTCCCTAGGAGGCACCTGCCTGAACGTCGGATGTATTCCCTCCAAGgtatgtttta ... ttccgttcagGCTCTTCTTCAGTCGTCTCACATGTATCACGAAGCCCAGCATAGCTTTGCA
EST: gi|100385290|gb|BY950882.1|BY950882
EST:     GAGGCTCCCTAGGAGGCACCTGCCTGAACGTCGGATGTATTCCCTCCAAG                         GCTCTTCTTCAGTCGTCTCACATGTATCACGAAGCCCAGCATAGCTTTGCA
genomic: GAGGCTCCCTAGGAGGCACCTGCCTGAACGTCGGATGTATTCCCTCCAAGgtatgtttta ... ttccgttcagGCTCTTCTTCAGTCGTCTCACATGTATCACGAAGCCCAGCATAGCTTTGCA
EST: gi|162248892|gb|FC422067.1|FC422067
EST:     GAGGCTCCCTAGGAGGCACCTGCCTGAATGTCGGATGTATTCCCTCCAAG                         GCTCTTCTTCAGTCGTCTCACATGTATCACGAAGCCCAGCATAGCTTTGCA
genomic: GAGGCTCCCTAGGAGGCACCTGCCTGAACGTCGGATGTATTCCCTCCAAGgtatgtttta ... ttccgttcagGCTCTTCTTCAGTCGTCTCACATGTATCACGAAGCCCAGCATAGCTTTGCA
EST: gi|100440494|gb|BY962229.1|BY962229
EST:     GAGGCTCCCTAGGAGGCACCTGCCTGAACGTCGGATGTATTCCCTCCAAG                         GCTCTTCTTCAGTCGTCTCACATGTATCACGAAGCCCAGCATAGCTTTGCA
genomic: GAGGCTCCCTAGGAGGCACCTGCCTGAACGTCGGATGTATTCCCTCCAAGgtatgtttta ... ttccgttcagGCTCTTCTTCAGTCGTCTCACATGTATCACGAAGCCCAGCATAGCTTTGCA
EST: gi|208344664|gb|DC905113.1|DC905113
EST:     GAGGCTCCCTAGGAGGCACCTGCCTGAACGTCGGATGTATTCCCTCCAAG                         GCTCTTCTTCAGTCGTCTCACATGTATCACGAAGCCCAGCATAGCTTTGCA
genomic: GAGGCTCCCTAGGAGGCACCTGCCTGAACGTCGGATGTATTCCCTCCAAGgtatgtttta ... ttccgttcagGCTCTTCTTCAGTCGTCTCACATGTATCACGAAGCCCAGCATAGCTTTGCA
EST: gi|100364972|gb|BY948001.1|BY948001
EST:     GAGGCTCCCTAGGAGGCACCTGCCTGAACGTCGGATGTATTCCCTCCAAG                         GCTCTTCTTCAGTCGTCTCACATGTATCACGAAGCCCAGCATAGCTTTGCA
genomic: GAGGCTCCCTAGGAGGCACCTGCCTGAACGTCGGATGTATTCCCTCCAAGgtatgtttta ... ttccgttcagGCTCTTCTTCAGTCGTCTCACATGTATCACGAAGCCCAGCATAGCTTTGCA
EST: gi|100447309|gb|CJ971608.1|CJ971608
EST:     GAGGCTCCCTAGGAGGCACCTGCCTGAACGTCGGATGTATTCCCTCCAAG                         GCTCTTCTTCAGTCGTCTCACATGTATCACGAAGCCCAGCATAGCTTTGCA
genomic: GAGGCTCCCTAGGAGGCACCTGCCTGAACGTCGGATGTATTCCCTCCAAGgtatgtttta ... ttccgttcagGCTCTTCTTCAGTCGTCTCACATGTATCACGAAGCCCAGCATAGCTTTGCA
EST: gi|100437054|gb|BY961328.1|BY961328
EST:     GAGGCTCCCTAGGAGGCACCTGCCTGAACGTCGGATGTATTCCCTCCAAG                         GCTCTTCTTCAGTCGTCTCACATGTATCACGAAGCCCAGCATAGCTTTGCA
genomic: GAGGCTCCCTAGGAGGCACCTGCCTGAACGTCGGATGTATTCCCTCCAAGgtatgtttta ... ttccgttcagGCTCTTCTTCAGTCGTCTCACATGTATCACGAAGCCCAGCATAGCTTTGCA
EST: gi|100404428|gb|BY973573.1|BY973573
EST:     GAGGCTCCCTAGGAGGCACCTGCCTGAACGTCGGATGTATTCCCTCCAAG                         GCTCTTCTTCAGTCGTCTCACATGTATCACGAAGCCCAGCATAGCTTTGCA
genomic: GAGGCTCCCTAGGAGGCACCTGCCTGAACGTCGGATGTATTCCCTCCAAGgtatgtttta ... ttccgttcagGCTCTTCTTCAGTCGTCTCACATGTATCACGAAGCCCAGCATAGCTTTGCA
EST: gi|100396414|gb|BY990117.1|BY990117
EST:     GAGGCTCCCTAGGAGGCACCTGCCTGAACGTCGGATGTATTCCCTCCAAG                         GCTCTTCTTCAGTCGTCTCACATGTATCACGAAGCCCAGCATAGCTTTGCA
genomic: GAGGCTCCCTAGGAGGCACCTGCCTGAACGTCGGATGTATTCCCTCCAAGgtatgtttta ... ttccgttcagGCTCTTCTTCAGTCGTCTCACATGTATCACGAAGCCCAGCATAGCTTTGCA
EST: gi|208354975|gb|DC914239.1|DC914239
EST:     GAGGCTCCCTAGGAGGCACCTGCCTGAACGTCGGATGTATTCCCTCCAAG                         GCTCTTCTTCAGTCGTCTCACATGTATCACGAAGCCCAGCATAGCTTTGCA
genomic: GAGGCTCCCTAGGAGGCACCTGCCTGAACGTCGGATGTATTCCCTCCAAGgtatgtttta ... ttccgttcagGCTCTTCTTCAGTCGTCTCACATGTATCACGAAGCCCAGCATAGCTTTGCA
EST: gi|100432113|gb|BY960341.1|BY960341
EST:     GAGGCTCCCTAGGAGGCACCTGCCTGAACGTCGGATGTATTCCCTCCAAG                         GCTCTTCTTCAGTCGTCTCACATGTATCACGAAGCCCAGCATAGCTTTGCA
genomic: GAGGCTCCCTAGGAGGCACCTGCCTGAACGTCGGATGTATTCCCTCCAAGgtatgtttta ... ttccgttcagGCTCTTCTTCAGTCGTCTCACATGTATCACGAAGCCCAGCATAGCTTTGCA
EST: gi|208359805|gb|DC939249.1|DC939249
EST:     GAGGCTCCCTAGGAGGCACCTGCCTGAACGTCGGATGTATTCCCTCCAAG                         GCTCTTCTTCAGTCGTCTCACATGTATCACGAAGCCCAGCATAGCTTTGCA
genomic: GAGGCTCCCTAGGAGGCACCTGCCTGAACGTCGGATGTATTCCCTCCAAGgtatgtttta ... ttccgttcagGCTCTTCTTCAGTCGTCTCACATGTATCACGAAGCCCAGCATAGCTTTGCA
EST: gi|162150774|gb|FC327046.1|FC327046
EST:     GAGGCTCCCTAGGAGGCACCTGCCTGAATGTCGGATGTATTCCCTCCAAG                         GCTCTTCTTCAGTCGTCTCACATGTATCACGAAGCCCAGCATAGCTTTGCA
genomic: GAGGCTCCCTAGGAGGCACCTGCCTGAACGTCGGATGTATTCCCTCCAAGgtatgtttta ... ttccgttcagGCTCTTCTTCAGTCGTCTCACATGTATCACGAAGCCCAGCATAGCTTTGCA

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 35 (upstream exon), 24 (downstream exon)
Score: 16

GGCCATCAAAGCTGCGCAGCTTGGATTTAAGACGACTTGTATCGAGGGCCGAGGCTCCCTAGGAGGCACCTGCCTGAACGTCGGATGTATTCCCTCCAAGgtatgtttta ... ttccgttcagGCTCTTCTTCAGTCGTCTCACATGTATCACGAAGCCCAGCATAGCTTTGCAGCACATGGAGTGAAGGTGGGATCCGTATCCATCGACCTTCCTGCTATGA




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