1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gttgtgaatattgcttccgtagatgtgattccgtttgacaggcatggaacgatgctatacattatgagaattttgctgataattttcattgttgagaagagaaggagtttcttgagttgttgatgaaatgtgtccgaagtatgactctgattgcgcgatggtgttctcatatagGGGGCAATCTCTAAAGAGACTAACAAGCCGGTCCAAGGTATTTCGGTGATGGGAGCTCTCAAGAATGTAGCTACTG
species | Physcomitrella patens |
transcript | PP1S98_113V6.4 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CTGCTAACAAGTTGAGTTCCAAGGCCATTGTAGACGAATTTCGGCACCAG GGGGCAATCTCTAAAGAGACTAACAAGCCGGTCCAAGGTATTTCGGTGATGEST: gi|18349339|gb|BJ181388.1|BJ181388
genomic: CTGCTAACAAGTTGAGTTCCAAGGCCATTGTAGACGAATTTCGGCACCAGgttgtgaata ... tctcatatagGGGGCAATCTCTAAAGAGACTAACAAGCCGGTCCAAGGTATTTCGGTGATG
EST: CTGCTAACAAGTTGAGTTCCAAGGCCATTGTAGACGAATTTCGGCACCAG GGGGCAATCTCTAAAGAGACTAACAAGCCGGTCCAAGGTATTTCGGTGATGEST: gi|18367740|gb|BJ199823.1|BJ199823
genomic: CTGCTAACAAGTTGAGTTCCAAGGCCATTGTAGACGAATTTCGGCACCAGgttgtgaata ... tctcatatagGGGGCAATCTCTAAAGAGACTAACAAGCCGGTCCAAGGTATTTCGGTGATG
EST: CTGCTAACAAGTTGAGTTCCAAGGCCATTGTAGACGAATTTCGGCACCAGG TEST: gi|18367740|gb|BJ199823.1|BJ199823
genomic: CTGCTAACAAGTTGAGTTCCAAGGCCATTGTAGACGAATTTCGGCACCA-Ggttgtgaata ... tctcatatag-
EST: CTGCTAACAAGTTGAGTTCCAAGGCCATTGTAGACGAATTTCGGCACCAGG TEST: gi|18367740|gb|BJ199823.1|BJ199823
genomic: CTGCTAACAAGTTGAGTTCCAAGGCCATTGTAGACGAATTTCGGCACCA-Ggttgtgaata ... tctcatatag-
EST: CTGCTAACAAGTTGAGTTCCAAGGCCATTGTAGACGAATTTCGGCACCAGG TEST: gi|18349121|gb|BJ181170.1|BJ181170
genomic: CTGCTAACAAGTTGAGTTCCAAGGCCATTGTAGACGAATTTCGGCACCA-Ggttgtgaata ... tctcatatag-
EST: CTGCTAACAAGTTGAGTTCCAAGGCCATTGTAGACGAATTTCGGCACCAG GGGGCAATCTCTAAAGAGACTAACAAGCCGGTCCAAGGTATTTCGGTGATGEST: gi|18366901|gb|BJ198981.1|BJ198981
genomic: CTGCTAACAAGTTGAGTTCCAAGGCCATTGTAGACGAATTTCGGCACCAGgttgtgaata ... tctcatatagGGGGCAATCTCTAAAGAGACTAACAAGCCGGTCCAAGGTATTTCGGTGATG
EST: CTGCTAACAAGTTGAGTTCCAAGGCCATTGTAGACGAATTTCGGCACCAG GGGGCAATCTCTAAAGAGACTAACAAGCCGGTCCAAGGTATTTCGGTGATGEST: gi|18360688|gb|BJ192751.1|BJ192751
genomic: CTGCTAACAAGTTGAGTTCCAAGGCCATTGTAGACGAATTTCGGCACCAGgttgtgaata ... tctcatatagGGGGCAATCTCTAAAGAGACTAACAAGCCGGTCCAAGGTATTTCGGTGATG
EST: CTGCTAACAAGTTGAGTTCCAAGGCCATTGTAGACGAATTTCGGCACCAG GGGGCAATCTCTAAAGAGACTAACAAGCCGGTCCAAGGTATTTCGGTGATGEST: gi|18375213|gb|BJ206791.1|BJ206791
genomic: CTGCTAACAAGTTGAGTTCCAAGGCCATTGTAGACGAATTTCGGCACCAGgttgtgaata ... tctcatatagGGGGCAATCTCTAAAGAGACTAACAAGCCGGTCCAAGGTATTTCGGTGATG
EST: CTGCTAACAAGTTGAGTTCCAAGGCCATTGTAGACGAATTTCGGCACCAG GGGGCAATCTCTAAAGAGACTAACAAGCCGGTCCAAGGTATTTCGGTGATGEST: gi|18362274|gb|BJ194344.1|BJ194344
genomic: CTGCTAACAAGTTGAGTTCCAAGGCCATTGTAGACGAATTTCGGCACCAGgttgtgaata ... tctcatatagGGGGCAATCTCTAAAGAGACTAACAAGCCGGTCCAAGGTATTTCGGTGATG
EST: CTGCTAACAAGTTGAGTTCCAAGGCCATTGTAGACGAATTTCGGCACCAG GGGGCAATCTCTAAAGAGACTAACAAGCCGGTCCAAGGTATTTCGGTGATGEST: gi|18357632|gb|BJ189691.1|BJ189691
genomic: CTGCTAACAAGTTGAGTTCCAAGGCCATTGTAGACGAATTTCGGCACCAGgttgtgaata ... tctcatatagGGGGCAATCTCTAAAGAGACTAACAAGCCGGTCCAAGGTATTTCGGTGATG
EST: CTGCTAACAAGTTGAGTTCCAAGGCCATTGTAGACGAATTTCGGCACCAG GGGGCAATCTCTAAAGAGACTAACAAGCCGGTCCAAGGTATTTCGGTGATGEST: gi|18343578|gb|BJ175616.1|BJ175616
genomic: CTGCTAACAAGTTGAGTTCCAAGGCCATTGTAGACGAATTTCGGCACCAGgttgtgaata ... tctcatatagGGGGCAATCTCTAAAGAGACTAACAAGCCGGTCCAAGGTATTTCGGTGATG
EST: CTGCTAACAAGTTGAGTTCCAAGGCCATTGTAGACGAATTTCGGCACCAG GGGGCAATCTCTAAAGAGACTAACAAGCCGGTCCAAGGTATTTCGGTGATGEST: gi|18366730|gb|BJ198809.1|BJ198809
genomic: CTGCTAACAAGTTGAGTTCCAAGGCCATTGTAGACGAATTTCGGCACCAGgttgtgaata ... tctcatatagGGGGCAATCTCTAAAGAGACTAACAAGCCGGTCCAAGGTATTTCGGTGATG
EST: CTGCTAACAAGTTGAGTTCCAAGGCCATTGTAGACGAATTTCGGCACCAG GGGGCAATCTCTAAAGAGACTAACAAGCCGGTCCAAGGTATTTCGGTGATGEST: gi|18372800|gb|BJ204402.1|BJ204402
genomic: CTGCTAACAAGTTGAGTTCCAAGGCCATTGTAGACGAATTTCGGCACCAGgttgtgaata ... tctcatatagGGGGCAATCTCTAAAGAGACTAACAAGCCGGTCCAAGGTATTTCGGTGATG
EST: CTGCTAACAAGTTGAGTTCCAAGGCCATTGTAGACGAATTTCGGCACCAG GGGGCAATCTCTAAAGAGACTAACAAGCCGGTCCAAGGTATTTCGGTGATGEST: gi|18366664|gb|BJ198743.1|BJ198743
genomic: CTGCTAACAAGTTGAGTTCCAAGGCCATTGTAGACGAATTTCGGCACCAGgttgtgaata ... tctcatatagGGGGCAATCTCTAAAGAGACTAACAAGCCGGTCCAAGGTATTTCGGTGATG
EST: CTGCTAACAAGTTGAGTTCCAAGGCCATTGTAGACGAATTTCGGCACCAG GGGGCAATCTCTAAAGAGACTAACAAGCCGGTCCAAGGTATTTCGGTGATGEST: gi|18351125|gb|BJ183176.1|BJ183176
genomic: CTGCTAACAAGTTGAGTTCCAAGGCCATTGTAGACGAATTTCGGCACCAGgttgtgaata ... tctcatatagGGGGCAATCTCTAAAGAGACTAACAAGCCGGTCCAAGGTATTTCGGTGATG
EST: CTGCTAACAAGTTGAGTTCCAAGGCCATTGTAGACGAATTTCGGCACCAG GGGGCAATCTCTAAAGAGACTAACAAGCCGGTCCAAGGTATTTCGGTGATG
genomic: CTGCTAACAAGTTGAGTTCCAAGGCCATTGTAGACGAATTTCGGCACCAGgttgtgaata ... tctcatatagGGGGCAATCTCTAAAGAGACTAACAAGCCGGTCCAAGGTATTTCGGTGATG
ttgatgaaatgtgtccgaagtatgactctgattgcgcgatggtgttctcatatagGGGGCAATCTCTAAAGAGACTAACAAGCCGGTCCAAGGTATTTCGGTGATGGGAGCTCTCAAGAATGTAGCTACTG
ctctgat putative branch site (score: 53)
tgttctc putative PPT
tcatata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttgtgaatattgcttccgtagatgtgattccgtttgacaggcatggaacgatgctatacattatgagaattttgctgataattttcattgttgagaagagaaggagtttcttgagttgttgatgaaatgtgtccgaagtatgactctgattgcgcgatggtgttctcatatagGGGGCAATCTCTAAAGAGACTAACAAGCCGGTCCAAGGTATTTCGGTGATGGGAGCTCTCAAGAATGTAGCTACTG
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