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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtattcagtcttccattggcgtcaattctgcgtgccttcgtacttctgtccttacatttatagattccatccttttcccttgttcatcgaactcaatgcctggtgtaaactccttggctcacacatacacacacacacacacattatatatatatatatatatatatgtatttaatcagtgcagtggttgccagAGTTGTGGAGGTACAGCGGCCTGCCCAGGTGTGGAAGCGTACAAAATGGGAGAATGCCACATTTCGATTGATAGAAAATTTGCACGTGTGGTTCCAAAAT

Basic information

species Physcomitrella patens
transcript PP1S97_9V6.1
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162277877|gb|FC454340.1|FC454340
EST:     ATCTCTGACTCACAGCATTCGGAAATTACGCCAG                         AGTTGTGGAGGTACAGCGGCCTGCCCAGGTGTGGAAGCGTACAAAATGGGA
genomic: ATCTCTGACTCACAGCATTCGGAAATTACGCCAGgtattcagtc ... tggttgccagAGTTGTGGAGGTACAGCGGCCTGCCCAGGTGTGGAAGCGTACAAAATGGGA
EST: gi|208375151|gb|DC945301.1|DC945301
EST:     TGACTCACAGCATTCGGAAATTACGCCAG                         AGTTGTGGAGGTACAGCGGCCTGCCCAGGTGTGGAAGCGTACAAAATGGGA
genomic: TGACTCACAGCATTCGGAAATTACGCCAGgtattcagtc ... tggttgccagAGTTGTGGAGGTACAGCGGCCTGCCCAGGTGTGGAAGCGTACAAAATGGGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cacattatatatatatatatatatatatgtatttaatcagtgcagtggttgccagAGTTGTGGAGGTACAGCGGCCTGCCCAGGTGTGGAAGCGTACAAAATGGGAGAATGCCACATTTCGATTGATAGAAAATTTGCACGTGTGGTTCCAAAAT
                              atttaat  putative branch site (score: 4)
     tatatatatatatata  TA-rich tract