Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCAGGCCAAGGCACGCCACTCCAATGGACAGGGGCGCTGGCCAGTGAAGTCAGCGACATTCTTGTTGGGTTTGTTGAAGAATGCAGAGAGCAATGCAGAGgttggtccgaaaaacatgtgatcgggtgctttaatgaatatgttagtttagattgtttgaatgaccacgatgtcacctgcaaattgacattaattaaactctttttgactatag

Basic information

species Physcomitrella patens
transcript PP1S97_78V6.2
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S97_78V6.3 (Physcomitrella patens), 5'ss of exon 2
lower sequence: GRMZM2G702426_T01 (Zea mays), 5'ss of exon 4
TCAGGCCAAGGCACGCCACTCCAATGGACAGGGGCGCTGGCCAGTGAAGTCAGCGACATTCTTGTTGGGTTTGTTGAAGAATGCAGAGAGCAATGCAGAGgttggtccgaaaaacatgtgatcgggtgctttaatgaata-tgttagtttagattgtttgaatgaccacgatgtcacctgcaaattgacattaattaaactctttttgactatag
 || || ||| | |||||||||||||| ||||| |||||||| || |||||||| |  ||| | |||| |||| |||||||||| ||||| || || || ||  | ||      |   |  |       || |  |   | |   | ||   | ||| ||  |   |   |  |   |||  | ||                             
ACAAGCAAAGTCTCGCCACTCCAATGGGCAGGGTCGCTGGCCTGTTAAGTCAGCCAGGTTCATATTGGATTTGCTGAAGAATGCTGAGAGTAACGCTGATgtatgccctcttgtctcttccttttcattttaagcgtgcactcacatttcctactgtctggtttgacttaacat-gtctgttatttccag-------------------------

upper sequence: PP1S97_78V6.3 (Physcomitrella patens), 5'ss of exon 2
lower sequence: EFJ21308 (Selaginella moellendorffii), 5'ss of exon 3
TCAGGCCAAGGCACGCCACTCCAATGGACAGGGGCGCTGGCCAGTGAAGTCAGCGACATTCTTGTTGGGTTTGTTGAAGAATGCAGAGAGCAATGCAGAGgttggtccgaaaaacatgtgatcgggtgctttaatgaatatgttagtttagattgtttgaatgaccacgatgtcacctgcaaattgacattaattaaactctttttgactatag
 ||||| ||  | || ||||||||||| ||||||||||||||||||||||| |||  |||| |  |||   |  | |||||||| |||||||| || |||||         ||| ||   |||   | ||| | |||||      ||   |||| ||| |                                                      
CCAGGCGAAATCCCGTCACTCCAATGGCCAGGGGCGCTGGCCAGTGAAGTCCGCGCGATTCCTCCTGGCGCTACTAAAGAATGCCGAGAGCAACGCTGAGgt---------aaaaatcccatct--ttcttcagtgaatca--cggt---gattctttcag-----------------------------------------------------

upper sequence: PP1S97_78V6.3 (Physcomitrella patens), 5'ss of exon 2
lower sequence: EFJ26852 (Selaginella moellendorffii), 5'ss of exon 3
TCAGGCCAAGGCACGCCACTCCAATGGACAGGGGCGCTGGCCAGTGAAGTCAGCGACATTCTTGTTGGGTTTGTTGAAGAATGCAGAGAGCAATGCAGAGgttggtccgaaaaacatgtgatcgggtgctttaatgaatatgttagtttagattgtttgaatgaccacgatgtcacctgcaaattgacattaattaaactctttttgactatag
 ||||| ||  | || ||||||||||| ||||||||||||||||||||||| |||  |||| |  |||   || | |||||||| |||||||| || |||||         ||| ||   |||   | ||| | |||||     || |  |||| ||| |                                                      
CCAGGCGAAATCCCGTCACTCCAATGGCCAGGGGCGCTGGCCAGTGAAGTCCGCGCGATTCCTCCTGGCGCTGCTAAAGAATGCTGAGAGCAACGCTGAGgt---------aaaaatcccatct--ttcttcagtgaat---caaggt--gattctttcag-----------------------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|67696433|gb|BJ956666.1|BJ956666
EST:     CAGCGACATTCTTGTTGGGTTTGTTGAAGAATGCAGAGAGCAATGCAGAG                         GTGAAGGGTCTCGATGTGGACACTCTTGTTGTATCACACATTCAAGTCAAC
genomic: CAGCGACATTCTTGTTGGGTTTGTTGAAGAATGCAGAGAGCAATGCAGAGgttggtccga ... ttgactatagGTGAAGGGTCTCGATGTGGACACTCTTGTTGTATCACACATTCAAGTCAAC
EST: gi|67571063|gb|BJ943887.1|BJ943887
EST:     CAGCGACATTCTTGTTGGGTTTGTTGAAGAATGCAGAGAGCAATGCAGAG                         GTGAAGGGTCTCGATGTGGACACTCTTGTTGTATCACACATTCAAGTCAAC
genomic: CAGCGACATTCTTGTTGGGTTTGTTGAAGAATGCAGAGAGCAATGCAGAGgttggtccga ... ttgactatagGTGAAGGGTCTCGATGTGGACACTCTTGTTGTATCACACATTCAAGTCAAC
EST: gi|67571535|gb|BJ944359.1|BJ944359
EST:     CAGCGACATTCTTGTTGGGTTTGTTGAAGAATGCAGAGAGCAATGCAGAG                         GTGAAGGGTCTCGATGTGGACACTCTTGTTGTATCACACATTCAAGTCAAC
genomic: CAGCGACATTCTTGTTGGGTTTGTTGAAGAATGCAGAGAGCAATGCAGAGgttggtccga ... ttgactatagGTGAAGGGTCTCGATGTGGACACTCTTGTTGTATCACACATTCAAGTCAAC
EST: gi|162260531|gb|FC435105.1|FC435105
EST:     CAGCGACATTCTTGTTGGGTTTGTTGAAGAATGCAGAGAGCAATGCAGAG                         GTGAAGGGTCTCGATGTGGACACTCTTGTTGTATCACACATTCAAGTCAAC
genomic: CAGCGACATTCTTGTTGGGTTTGTTGAAGAATGCAGAGAGCAATGCAGAGgttggtccga ... ttgactatagGTGAAGGGTCTCGATGTGGACACTCTTGTTGTATCACACATTCAAGTCAAC
EST: gi|67572512|gb|BJ945336.1|BJ945336
EST:     CAGCGACATTCTTGTTGGGTTTGTTGAAGAATGCAGAGAGCAATGCAGAG                         GTGAAGGGTCTCGATGTGGACACTCTTGTTGTATCACACATTCAAGTCAAC
genomic: CAGCGACATTCTTGTTGGGTTTGTTGAAGAATGCAGAGAGCAATGCAGAGgttggtccga ... ttgactatagGTGAAGGGTCTCGATGTGGACACTCTTGTTGTATCACACATTCAAGTCAAC
EST: gi|67696650|gb|BJ956883.1|BJ956883
EST:     CAGCGACATTCTTGTTGGGTTTGTTGAAGAATGCAGAGAGCAATGCAGAG                         GTGAAGGGTCTCGATGTGGACACTCTTGTTGTATCACACATTCAAGTCAAC
genomic: CAGCGACATTCTTGTTGGGTTTGTTGAAGAATGCAGAGAGCAATGCAGAGgttggtccga ... ttgactatagGTGAAGGGTCTCGATGTGGACACTCTTGTTGTATCACACATTCAAGTCAAC
EST: gi|162279259|gb|FC455806.1|FC455806
EST:     CAGCGACATTCTTGTTGGGTTTGTTGAAGAATGCAGAGAGCAATGCAGAG                         GTGAAGGGTCTCGATGTGGACACTCTTGTTGTATCACACATTCAAGTCAAC
genomic: CAGCGACATTCTTGTTGGGTTTGTTGAAGAATGCAGAGAGCAATGCAGAGgttggtccga ... ttgactatagGTGAAGGGTCTCGATGTGGACACTCTTGTTGTATCACACATTCAAGTCAAC
EST: gi|162278150|gb|FC454385.1|FC454385
EST:     CAGCGACATTCTTGTTGGGTTTGTTGAAGAATGCAGAGAGCAATGCAGAG                         GTGAAGGGTCTCGATGTGGACACTCTTGTTGTATCACACATTCAAGTCAAC
genomic: CAGCGACATTCTTGTTGGGTTTGTTGAAGAATGCAGAGAGCAATGCAGAGgttggtccga ... ttgactatagGTGAAGGGTCTCGATGTGGACACTCTTGTTGTATCACACATTCAAGTCAAC
EST: gi|18332577|gb|BJ164590.1|BJ164590
EST:     CAGCGACATTCTTGTTGGGTTTGTTGAAGAATGCAGAGAGCAATGCAGAG                         GTGAAGGGTCTCGATGTGGACACTCTTGTTGTATCACACATTCAAGTCAAC
genomic: CAGCGACATTCTTGTTGGGTTTGTTGAAGAATGCAGAGAGCAATGCAGAGgttggtccga ... ttgactatagGTGAAGGGTCTCGATGTGGACACTCTTGTTGTATCACACATTCAAGTCAAC
EST: gi|67569399|gb|BJ942223.1|BJ942223
EST:     CAGCGACATTCTTGTTGGGTTTGTTGAAGAATGCAGAGAGCAATGCAGAG                         GTGAAGGGTCTCGATGTGGACACTCTTGTTGTATCACACATTCAAGTCAAC
genomic: CAGCGACATTCTTGTTGGGTTTGTTGAAGAATGCAGAGAGCAATGCAGAGgttggtccga ... ttgactatagGTGAAGGGTCTCGATGTGGACACTCTTGTTGTATCACACATTCAAGTCAAC
EST: gi|162259989|gb|FC435292.1|FC435292
EST:     CAGCGACATTCTTGTTGGGTTTGTTGAAGAATGCAGAGAGCAATGCAGAG                         GTGAAGGGTCTCGATGTGGACACTCTTGTTGTATCACACATTCAAGTCAAC
genomic: CAGCGACATTCTTGTTGGGTTTGTTGAAGAATGCAGAGAGCAATGCAGAGgttggtccga ... ttgactatagGTGAAGGGTCTCGATGTGGACACTCTTGTTGTATCACACATTCAAGTCAAC
EST: gi|162279258|gb|FC455805.1|FC455805
EST:     CAGCGACATTCTTGTTGGGTTTGTTGAAGAATGCAGAGAGCAATGCAGAG                         GTGAAGGGTCTCGATGTGGACACTCTTGTTGTATCACACATTCAAGTCAAC
genomic: CAGCGACATTCTTGTTGGGTTTGTTGAAGAATGCAGAGAGCAATGCAGAGgttggtccga ... ttgactatagGTGAAGGGTCTCGATGTGGACACTCTTGTTGTATCACACATTCAAGTCAAC
EST: gi|162260530|gb|FC435104.1|FC435104
EST:     CAGCGACATTCTTGTTGGGTTTGTTGAAGAATGCAGAGAGCAATGCAGAG                         GTGAAGGGTCTCGATGTGGACACTCTTGTTGTATCACACATTCAAGTCAAC
genomic: CAGCGACATTCTTGTTGGGTTTGTTGAAGAATGCAGAGAGCAATGCAGAGgttggtccga ... ttgactatagGTGAAGGGTCTCGATGTGGACACTCTTGTTGTATCACACATTCAAGTCAAC
EST: gi|67701215|gb|BJ961448.1|BJ961448
EST:     AGAATGCAGAGAGCAATGCAGAG                         GTGAAGGGTCTCGATGTGGACACTCTTGTTGTATCACACATTCAAGTCAAC
genomic: AGAATGCAGAGAGCAATGCAGAGgttggtccga ... ttgactatagGTGAAGGGTCTCGATGTGGACACTCTTGTTGTATCACACATTCAAGTCAAC
EST: gi|67704010|gb|BJ964243.1|BJ964243
EST:     CAGCGACATTCTTGTTGGGTTTGTTGAAGAATGCANAGAGCAATGCAGAG                         GTGAAGGGTCTCGATGTGGACACTCTTGTTGTATCACACATTCAAGTCAAC
genomic: CAGCGACATTCTTGTTGGGTTTGTTGAAGAATGCAGAGAGCAATGCAGAGgttggtccga ... ttgactatagGTGAAGGGTCTCGATGTGGACACTCTTGTTGTATCACACATTCAAGTCAAC
EST: gi|67696219|gb|BJ956452.1|BJ956452
EST:     CAGCGACATTCTTGTTGGGTTTGTTGAAGAATGCAGAGAGCAATGCAGAG                         GTGAAGGGTCTCGATGTGGACACTCTTGTTGTATCACACATTCAAGTCAAC
genomic: CAGCGACATTCTTGTTGGGTTTGTTGAAGAATGCAGAGAGCAATGCAGAGgttggtccga ... ttgactatagGTGAAGGGTCTCGATGTGGACACTCTTGTTGTATCACACATTCAAGTCAAC
EST: gi|67578333|gb|BJ950500.1|BJ950500
EST:     CAGCGACATTCTTGTTGGGTTTGTTGAAGAATGCAGAGAGCAATGCAGAG                         GTGAAGGGTCTCGATGTGGACACTCTTGTTGTATCACACATTCAAGTCAAC
genomic: CAGCGACATTCTTGTTGGGTTTGTTGAAGAATGCAGAGAGCAATGCAGAGgttggtccga ... ttgactatagGTGAAGGGTCTCGATGTGGACACTCTTGTTGTATCACACATTCAAGTCAAC
EST: gi|67699663|gb|BJ959896.1|BJ959896
EST:     CAGCGACATTCTTGTTGGGTTTGTTGAAGAATGCAGAGAGCAATGCAGAG                         GTGAAGGGTCTCGATGTGGACACTCTTGTTGTATCACACATTCAAGTCAAC
genomic: CAGCGACATTCTTGTTGGGTTTGTTGAAGAATGCAGAGAGCAATGCAGAGgttggtccga ... ttgactatagGTGAAGGGTCTCGATGTGGACACTCTTGTTGTATCACACATTCAAGTCAAC
EST: gi|162276588|gb|FC451971.1|FC451971
EST:     CAGCGACATTCTTGTTGGGTTTGTTGAAGAATGCAGAGAGCAATGCAGAG                         GTGAAGGGTCTCGATGTGGACACTCTTGTTGTATCACACATTCAAGTCAAC
genomic: CAGCGACATTCTTGTTGGGTTTGTTGAAGAATGCAGAGAGCAATGCAGAGgttggtccga ... ttgactatagGTGAAGGGTCTCGATGTGGACACTCTTGTTGTATCACACATTCAAGTCAAC
EST: gi|67573050|gb|BJ945874.1|BJ945874
EST:     CAGCGACATTCTTGTTGGGTTTGTTGAAGAATGCAGAGAGCAATGCAGAG                         GTGAAGGGTCTCGATGTGGACACTCTTGTTGTATCACACATTCAAGTCAAC
genomic: CAGCGACATTCTTGTTGGGTTTGTTGAAGAATGCAGAGAGCAATGCAGAGgttggtccga ... ttgactatagGTGAAGGGTCTCGATGTGGACACTCTTGTTGTATCACACATTCAAGTCAAC
EST: gi|162246687|gb|FC425280.1|FC425280
EST:     CAGCGACATTCTTGTTGGGTTTGTTGAAGAATGCAGAGAGCAATGCAGAG                         GTGAAGGGTCTCGATGTGGACACTCTTGTTGTATCACACATTCAAGTCAAC
genomic: CAGCGACATTCTTGTTGGGTTTGTTGAAGAATGCAGAGAGCAATGCAGAGgttggtccga ... ttgactatagGTGAAGGGTCTCGATGTGGACACTCTTGTTGTATCACACATTCAAGTCAAC
EST: gi|67571332|gb|BJ944156.1|BJ944156
EST:     CAGCGACATTCTTGTTGGGTTTGTTGAAGAATGCAGAGAGCAATGCAGAG                         GTGAAGGGTCTCGATGTGGACACTCTTGTTGTATCACACATTCAAGTCAAC
genomic: CAGCGACATTCTTGTTGGGTTTGTTGAAGAATGCAGAGAGCAATGCAGAGgttggtccga ... ttgactatagGTGAAGGGTCTCGATGTGGACACTCTTGTTGTATCACACATTCAAGTCAAC
EST: gi|162246688|gb|FC425281.1|FC425281
EST:     CAGCGACATTCTTGTTGGGTTTGTTGAAGAATGCAGAGAGCAATGCAGAG                         GTGAAGGGTCTCGATGTGGACACTCTTGTTGTATCACACATTCAAGTCAAC
genomic: CAGCGACATTCTTGTTGGGTTTGTTGAAGAATGCAGAGAGCAATGCAGAGgttggtccga ... ttgactatagGTGAAGGGTCTCGATGTGGACACTCTTGTTGTATCACACATTCAAGTCAAC
EST: gi|67694652|gb|BJ954885.1|BJ954885
EST:     CAGCGACATTCTTGTTGGGTTTGTTGAAGAATGCAGAGAGCAATGCAGAG                         GTGAAGGGTCTCGATGTGGACACTCTTGTTGTATCACACATTCAAGTCAAC
genomic: CAGCGACATTCTTGTTGGGTTTGTTGAAGAATGCAGAGAGCAATGCAGAGgttggtccga ... ttgactatagGTGAAGGGTCTCGATGTGGACACTCTTGTTGTATCACACATTCAAGTCAAC
EST: gi|67573265|gb|BJ946089.1|BJ946089
EST:     CAGCGACATTCTTGTTGGGTTTGTTGAAGAATGCAGAGAGCAATGCAGAG                         GTGAAGGGTCTCGATGTGGACACTCTTGTTGTATCACACATTCAAGTCAAC
genomic: CAGCGACATTCTTGTTGGGTTTGTTGAAGAATGCAGAGAGCAATGCAGAGgttggtccga ... ttgactatagGTGAAGGGTCTCGATGTGGACACTCTTGTTGTATCACACATTCAAGTCAAC
EST: gi|67576166|gb|BJ948990.1|BJ948990
EST:     CAGCGACATTCTTGTTGGGTTTGTTGAAGAATGCAGAGAGCAATGCAGAG                         GTGAAGGGTCTCGATGTGGACACTCTTGTTGTATCACACATTCAAGTCAAC
genomic: CAGCGACATTCTTGTTGGGTTTGTTGAAGAATGCAGAGAGCAATGCAGAGgttggtccga ... ttgactatagGTGAAGGGTCTCGATGTGGACACTCTTGTTGTATCACACATTCAAGTCAAC
EST: gi|67692660|gb|BJ952893.1|BJ952893
EST:     CAGCGACATTCTTGTTGGGTTTGTTGAAGAATGCAGAGAGCAATGCAGAG                         GTGAAGGGTCTCGATGTGGACACTCTTGTTGTATCACACATTCAAGTCAAC
genomic: CAGCGACATTCTTGTTGGGTTTGTTGAAGAATGCAGAGAGCAATGCAGAGgttggtccga ... ttgactatagGTGAAGGGTCTCGATGTGGACACTCTTGTTGTATCACACATTCAAGTCAAC
EST: gi|67695885|gb|BJ956118.1|BJ956118
EST:     CAGCGACATTCTTGTTGGGTTTGTTGAAGAATGCAGAGAGCAATGCAGAG                         GTGAAGGGTCTCGATGTGGACACTCTTGTTGTATCACACATTCAAGTCAAC
genomic: CAGCGACATTCTTGTTGGGTTTGTTGAAGAATGCAGAGAGCAATGCAGAGgttggtccga ... ttgactatagGTGAAGGGTCTCGATGTGGACACTCTTGTTGTATCACACATTCAAGTCAAC
EST: gi|67572806|gb|BJ945630.1|BJ945630
EST:     CAGCGACATTCTTGTTGGGTTTGTTGAAGAATGCAGAGAGCAATGCAGAG                         GTGAAGGGTCTCGATGTGGACACTCTTGTTGTATCACACATTCAAGTCAAC
genomic: CAGCGACATTCTTGTTGGGTTTGTTGAAGAATGCAGAGAGCAATGCAGAGgttggtccga ... ttgactatagGTGAAGGGTCTCGATGTGGACACTCTTGTTGTATCACACATTCAAGTCAAC
EST: gi|162252890|gb|FC429263.1|FC429263
EST:     CAGCGACATTCTTGTTGGGTTTGTTGAAGAATGCAGAGAGCAATGCAGAG                         GTGAAGGGTCTCGATGTGGACACTCTTGTTGTATCACACATTCAAGTCAAC
genomic: CAGCGACATTCTTGTTGGGTTTGTTGAAGAATGCAGAGAGCAATGCAGAGgttggtccga ... ttgactatagGTGAAGGGTCTCGATGTGGACACTCTTGTTGTATCACACATTCAAGTCAAC
EST: gi|67694374|gb|BJ954607.1|BJ954607
EST:     CAGCGACATTCTTGTTGGGTTTGTTGAAGAATGCAGAGAGCAATGCAGAG                         GTGAAGGGTCTCGATGTGGACACTCTTGTTGTATCACACATTCAAGTCAAC
genomic: CAGCGACATTCTTGTTGGGTTTGTTGAAGAATGCAGAGAGCAATGCAGAGgttggtccga ... ttgactatagGTGAAGGGTCTCGATGTGGACACTCTTGTTGTATCACACATTCAAGTCAAC
EST: gi|67572841|gb|BJ945665.1|BJ945665
EST:     CAGCGACATTCTTGTTGGGTTTGTTGAAGAATGCAGAGAGCAATGCAGAG                         GTGAAGGGTCTCGATGTGGACACTCTTGTTGTATCACACATTCAAGTCAAC
genomic: CAGCGACATTCTTGTTGGGTTTGTTGAAGAATGCAGAGAGCAATGCAGAGgttggtccga ... ttgactatagGTGAAGGGTCTCGATGTGGACACTCTTGTTGTATCACACATTCAAGTCAAC
EST: gi|67695151|gb|BJ955384.1|BJ955384
EST:     CAGCGACATTCTTGTTGGGTTTGTTGAAGAATGCAGAGAGCAATGCAGAG                         GTGAAGGGTCTCGATGTGGACACTCTTGTTGTATCACACATTCAAGTCAAC
genomic: CAGCGACATTCTTGTTGGGTTTGTTGAAGAATGCAGAGAGCAATGCAGAGgttggtccga ... ttgactatagGTGAAGGGTCTCGATGTGGACACTCTTGTTGTATCACACATTCAAGTCAAC
EST: gi|67571783|gb|BJ944607.1|BJ944607
EST:     CAGCGACATTCTTGTTGGGTTTGTTGAAGAATGCAGAGAGCAATGCAGAG                         GTGAAGGGTCTCGATGTGGACACTCTTGTTGTATCACACATTCAAGTCAAC
genomic: CAGCGACATTCTTGTTGGGTTTGTTGAAGAATGCAGAGAGCAATGCAGAGgttggtccga ... ttgactatagGTGAAGGGTCTCGATGTGGACACTCTTGTTGTATCACACATTCAAGTCAAC
EST: gi|162259990|gb|FC435293.1|FC435293
EST:     CAGCGACATTCTTGTTGGGTTTGTTGAAGAATGCAGAGAGCAATGCAGAG                         GTGAAGGGTCTCGATGTGGACACTCTTGTTGTATCACACATTCAAGTCAAC
genomic: CAGCGACATTCTTGTTGGGTTTGTTGAAGAATGCAGAGAGCAATGCAGAGgttggtccga ... ttgactatagGTGAAGGGTCTCGATGTGGACACTCTTGTTGTATCACACATTCAAGTCAAC
EST: gi|18329135|gb|BJ161141.1|BJ161141
EST:     CAGCGACATTCTTGTTGGGTTTGTTGAAGAATGCAGAGAGCAATGCAGAG                         GTGAAGGGTCTCGATGTGGACACTCTTGTTGTATCACACATTCAAGTCAAC
genomic: CAGCGACATTCTTGTTGGGTTTGTTGAAGAATGCAGAGAGCAATGCAGAGgttggtccga ... ttgactatagGTGAAGGGTCTCGATGTGGACACTCTTGTTGTATCACACATTCAAGTCAAC
EST: gi|67694876|gb|BJ955109.1|BJ955109
EST:     CAGCGACATTCTTGTTGGGTTTGTTGAAGAATGCAGAGAGCAATGCAGAG                         GTGAAGGGTCTCGATGTGGACACTCTTGTTGTATCACACATTCAAGTCAAC
genomic: CAGCGACATTCTTGTTGGGTTTGTTGAAGAATGCAGAGAGCAATGCAGAGgttggtccga ... ttgactatagGTGAAGGGTCTCGATGTGGACACTCTTGTTGTATCACACATTCAAGTCAAC

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 35 (upstream exon), 34 (downstream exon)
Score: 57

TCAGGCCAAGGCACGCCACTCCAATGGACAGGGGCGCTGGCCAGTGAAGTCAGCGACATTCTTGTTGGGTTTGTTGAAGAATGCAGAGAGCAATGCAGAGgttggtccga ... ttgactatagGTGAAGGGTCTCGATGTGGACACTCTTGTTGTATCACACATTCAAGTCAACCAGGCGCAGAAGCAGCGAAGACGTACTTACCGTGCCCACGGGCGTATCA




<











<


<









Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TCAGGCCAAGGCACGCCACTCCAATGGACAGGGGCGCTGGCCAGTGAAGTCAGCGACATTCTTGTTGGGTTTGTTGAAGAATGCAGAGAGCAATGCAGAGgttggtccgaaaaacatgtgatcgggtgctttaatgaatatgttagtttagattgtttgaatgaccacgatgtcacctgcaaattgacattaattaaactctttttgactatag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA