Skip to another splice site:
1  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGTGAGGAGTCATTCAGTGTTCAGGTACAGGATAGTTCGGGTGATATCTGAGCAATAACCGCGTGCTGAGCTCTACAGTCTGCTCTGTGCTACTGAATCGgtaatctctctgaacctggttgtgacgatttagggtggtgttttccggagacacgttcaggttgactcgatggtattagatttccagggaggtgacacag...

Basic information

species Physcomitrella patens
transcript PP1S97_59V6.2
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18359677|gb|BJ191738.1|BJ191738
EST:     AGCAATAACCGCGTGCTGAGCTCTACAGTCTGCTCTGTGCTACTGAATCG                         GTGATTTGGTAACATGGCTGCCCGTTTCGCTTTAGTGATGCTGGCCACCAT
genomic: AGCAATAACCGCGTGCTGAGCTCTACAGTCTGCTCTGTGCTACTGAATCGgtaatctctc ... attttcgcagGTGATTTGGTAACATGGCTGCCCGTTTCGCTTTAGTGATGCTGGCCACCAT
EST: gi|18368936|gb|BJ201021.1|BJ201021
EST:     AGCAATAACCGCGTGCTGAGCTCTACAGTCTGCTCTGTGCTACTGAATCG                         GTGATTTGGTAACATGGCTGCCCGTTTCGCTTTAGTGATGCTGGCCACCAT
genomic: AGCAATAACCGCGTGCTGAGCTCTACAGTCTGCTCTGTGCTACTGAATCGgtaatctctc ... attttcgcagGTGATTTGGTAACATGGCTGCCCGTTTCGCTTTAGTGATGCTGGCCACCAT
EST: gi|18364721|gb|BJ196794.1|BJ196794
EST:     AGCAATAACCGCGTGCTGAGCTCTACAGTCTGCTCTGTGCTACTGAATCG                         GTGATTTGGTAACATGGCTGCCCGTTTCGCTTTAGTGATGCTGGCCACCAT
genomic: AGCAATAACCGCGTGCTGAGCTCTACAGTCTGCTCTGTGCTACTGAATCGgtaatctctc ... attttcgcagGTGATTTGGTAACATGGCTGCCCGTTTCGCTTTAGTGATGCTGGCCACCAT
EST: gi|18359056|gb|BJ191116.1|BJ191116
EST:     AGCAATAACCGCGTGCTGAGCTCTACAGTCTGCTCTGTGCTACTGAATCG                         GTGATTTGGTAACATGGCTGCCCGTTTCGCTTTAGTGATGCTGGCCACCAT
genomic: AGCAATAACCGCGTGCTGAGCTCTACAGTCTGCTCTGTGCTACTGAATCGgtaatctctc ... attttcgcagGTGATTTGGTAACATGGCTGCCCGTTTCGCTTTAGTGATGCTGGCCACCAT
EST: gi|162153974|gb|FC329481.1|FC329481
EST:     AGCAATAACCGCGTGCTGAGCTCTACAGTCTGCTCTGTGCTACTGAATCG                         GTGATTTGGTAACATGGCTGCCCGTTTCGCTTTAGTGATGCTGGCCACCAT
genomic: AGCAATAACCGCGTGCTGAGCTCTACAGTCTGCTCTGTGCTACTGAATCGgtaatctctc ... attttcgcagGTGATTTGGTAACATGGCTGCCCGTTTCGCTTTAGTGATGCTGGCCACCAT
EST: gi|162225930|gb|FC400961.1|FC400961
EST:     AGCAATAACCGCGTGCTGAGCTCTACAGTCTGCTCTGTGCTACTGAATCG                         GTGATTTGGTAACATGGCTGCCCGTTTCGCTTTAGTGATGCTGGCCACCAT
genomic: AGCAATAACCGCGTGCTGAGCTCTACAGTCTGCTCTGTGCTACTGAATCGgtaatctctc ... attttcgcagGTGATTTGGTAACATGGCTGCCCGTTTCGCTTTAGTGATGCTGGCCACCAT
EST: gi|18364210|gb|BJ196283.1|BJ196283
EST:     AGCAATAACCGCGTGCTGAGCTCTACAGTCTGCTCTGTGCTACTGAATCG                         GTGATTTGGTAACATGGCTGCCCGTTTCGCTTTAGTGATGCTGGCCACCAT
genomic: AGCAATAACCGCGTGCTGAGCTCTACAGTCTGCTCTGTGCTACTGAATCGgtaatctctc ... attttcgcagGTGATTTGGTAACATGGCTGCCCGTTTCGCTTTAGTGATGCTGGCCACCAT
EST: gi|162215041|gb|FC391329.1|FC391329
EST:     CTGTGCTACTGAATCG                         GTGATTTGGTAACATGGCTGCCCGTTTCGCTTTAGTGATGCTGGCCACCAT
genomic: CTGTGCTACTGAATCGgtaatctctc ... attttcgcagGTGATTTGGTAACATGGCTGCCCGTTTCGCTTTAGTGATGCTGGCCACCAT
EST: gi|162250794|gb|FC426838.1|FC426838
EST:     GTGCTACTGAATCG                         GTGATTTGGTAACATGGCTGCCCGTTTCGCTTTAGTGATGCTGGCCACCAT
genomic: GTGCTACTGAATCGgtaatctctc ... attttcgcagGTGATTTGGTAACATGGCTGCCCGTTTCGCTTTAGTGATGCTGGCCACCAT
EST: gi|162240475|gb|FC419330.1|FC419330
EST:     AGCAATAACCGCGTGCTGAGCTCTACAGTCTGCTCTGTGCTACTGAATCG                         GTGATTTGGTAACATGGCTGCCCGTTTCGCTTTAGTGATGCTGGCCACCAT
genomic: AGCAATAACCGCGTGCTGAGCTCTACAGTCTGCTCTGTGCTACTGAATCGgtaatctctc ... attttcgcagGTGATTTGGTAACATGGCTGCCCGTTTCGCTTTAGTGATGCTGGCCACCAT
EST: gi|161982345|gb|EE296259.1|EE296259
EST:     AGCAATAACCGCGTGCTGAGCTCTACAGTCTGCTCTGTGCTACTGAATCG                         GTGATTTGGTAACATGGCTGCCCGTTTCGCTTTAGTGATGCTGGCCACCAT
genomic: AGCAATAACCGCGTGCTGAGCTCTACAGTCTGCTCTGTGCTACTGAATCGgtaatctctc ... attttcgcagGTGATTTGGTAACATGGCTGCCCGTTTCGCTTTAGTGATGCTGGCCACCAT
EST: gi|18361181|gb|BJ193246.1|BJ193246
EST:     AGCAATAACCGCGTGCTGAGCTCTACAGTCTGCTCTGTGCTACTGAATCG                         GTGATTTGGTAACATGGCTGCCCGTTTCGCTTTAGTGATGCTGGCCACCAT
genomic: AGCAATAACCGCGTGCTGAGCTCTACAGTCTGCTCTGTGCTACTGAATCGgtaatctctc ... attttcgcagGTGATTTGGTAACATGGCTGCCCGTTTCGCTTTAGTGATGCTGGCCACCAT
EST: gi|162236692|gb|FC413787.1|FC413787
EST:     AGCAATAACCGCGTGCTGAGCTCTACAGTCTGCTCTGTGCTACTGAATCG                         GTGATTTGGTAACATGGCTGCCCGTTTCGCTTTAGTGATGCTGGCCACCAT
genomic: AGCAATAACCGCGTGCTGAGCTCTACAGTCTGCTCTGTGCTACTGAATCGgtaatctctc ... attttcgcagGTGATTTGGTAACATGGCTGCCCGTTTCGCTTTAGTGATGCTGGCCACCAT
EST: gi|67693649|gb|BJ953882.1|BJ953882
EST:     AGCAATAACCGCGTGCTGAGCTCTACAGTCTGCTCTGTGCTACTGAATCG                         GTGATTTGGTAACATGGCTGCCCGTTTCGCTTTAGTGATGCTGGCCACCAT
genomic: AGCAATAACCGCGTGCTGAGCTCTACAGTCTGCTCTGTGCTACTGAATCGgtaatctctc ... attttcgcagGTGATTTGGTAACATGGCTGCCCGTTTCGCTTTAGTGATGCTGGCCACCAT
EST: gi|18370443|gb|BJ202045.1|BJ202045
EST:     AGCAATAACCGCGTGCTGAGCTCTACAGTCTGCTCTGTGCTACTGAATCG                         GTGATTTGGTAACATGGCTGCCCGTTTCGCTTTAGTGATGCTGGCCACCAT
genomic: AGCAATAACCGCGTGCTGAGCTCTACAGTCTGCTCTGTGCTACTGAATCGgtaatctctc ... attttcgcagGTGATTTGGTAACATGGCTGCCCGTTTCGCTTTAGTGATGCTGGCCACCAT
EST: gi|162249588|gb|FC426780.1|FC426780
EST:     GCGTGCTGAGCTCTACAGTCTGCTCTGTGCTACTGAATCG                         GTGATTTGGTAACATGGCTGCCCGTTTCGCTTTAGTGATGCTGGCCACCAT
genomic: GCGTGCTGAGCTCTACAGTCTGCTCTGTGCTACTGAATCGgtaatctctc ... attttcgcagGTGATTTGGTAACATGGCTGCCCGTTTCGCTTTAGTGATGCTGGCCACCAT
EST: gi|162226200|gb|FC401660.1|FC401660
EST:     AGCAATAACCGCGTGCTGAGCTCTACAGTCTGCTCTGTGCTACTGAATCG                         GTGATTTGGTAACATGGCTGCCCGTTTCGCTTTAGTGATGCTGGCCACCAT
genomic: AGCAATAACCGCGTGCTGAGCTCTACAGTCTGCTCTGTGCTACTGAATCGgtaatctctc ... attttcgcagGTGATTTGGTAACATGGCTGCCCGTTTCGCTTTAGTGATGCTGGCCACCAT
EST: gi|162214150|gb|FC390196.1|FC390196
EST:     TGCTACTGAATCG                         GTGATTTGGTAACATGGCTGCCCGTTTCGCTTTAGTGATGCTGGCCACCAT
genomic: TGCTACTGAATCGgtaatctctc ... attttcgcagGTGATTTGGTAACATGGCTGCCCGTTTCGCTTTAGTGATGCTGGCCACCAT
EST: gi|162265090|gb|FC440969.1|FC440969
EST:     AGCAATAACCGCGTGCTGAGCTCTACAGTCTGCTCTGTGCTACTGAATCG                         GTGATTTGGTAACATGGCTGCCCGTTTCGCTTTAGTGATGCTGGCCACCAT
genomic: AGCAATAACCGCGTGCTGAGCTCTACAGTCTGCTCTGTGCTACTGAATCGgtaatctctc ... attttcgcagGTGATTTGGTAACATGGCTGCCCGTTTCGCTTTAGTGATGCTGGCCACCAT
EST: gi|18364211|gb|BJ196284.1|BJ196284
EST:     AGCAATAACCGCGTGCTGAGCTCTACAGTCTGCTCTGTGCTACTGAATCG                         GTGATTTGGTAACATGGCTGCCCGTTTCGCTTTAGTGATGCTGGCCACCAT
genomic: AGCAATAACCGCGTGCTGAGCTCTACAGTCTGCTCTGTGCTACTGAATCGgtaatctctc ... attttcgcagGTGATTTGGTAACATGGCTGCCCGTTTCGCTTTAGTGATGCTGGCCACCAT
EST: gi|162202489|gb|FC380030.1|FC380030
EST:     AGCAATAACCGCGTGCTGAGCTCTACAGTCTGCTCTGTGCTACTGAATCG                         GTGATTTGGTAACATGGCTGCCCGTTTCGCTTTAGTGATGCTGGCCACCAT
genomic: AGCAATAACCGCGTGCTGAGCTCTACAGTCTGCTCTGTGCTACTGAATCGgtaatctctc ... attttcgcagGTGATTTGGTAACATGGCTGCCCGTTTCGCTTTAGTGATGCTGGCCACCAT
EST: gi|162265089|gb|FC440968.1|FC440968
EST:     TGTGCTACTGAATCG                         GTGATTTGGTAACATGGCTGCCCGTTTCGCTTTAGTGATGCTGGCCACCAT
genomic: TGTGCTACTGAATCGgtaatctctc ... attttcgcagGTGATTTGGTAACATGGCTGCCCGTTTCGCTTTAGTGATGCTGGCCACCAT
EST: gi|162226199|gb|FC401659.1|FC401659
EST:     AGCAATAACCGCGTGCTGAGCTCTACAGTCTGCTCTGTGCTACTGAATCG                         GTGATTTGGTAACATGGCTGCCCGTTTCGCTTTAGTGATGCTGGCCACCAT
genomic: AGCAATAACCGCGTGCTGAGCTCTACAGTCTGCTCTGTGCTACTGAATCGgtaatctctc ... attttcgcagGTGATTTGGTAACATGGCTGCCCGTTTCGCTTTAGTGATGCTGGCCACCAT
EST: gi|18375446|gb|BJ207024.1|BJ207024
EST:     AGCAATAACCGCGTGCTGAGCTCTACAGTCTGCTCTGTGCTACTGAATCG                         GTGATTTGGTAACATGGCTGCCCGTTTCGCTTTAGTGATGCTGGCCACCAT
genomic: AGCAATAACCGCGTGCTGAGCTCTACAGTCTGCTCTGTGCTACTGAATCGgtaatctctc ... attttcgcagGTGATTTGGTAACATGGCTGCCCGTTTCGCTTTAGTGATGCTGGCCACCAT
EST: gi|162229654|gb|FC403977.1|FC403977
EST:     AGCAATAACCGCGTGCTGAGCTCTACAGTCTGCTCTGTGCTACTGAATCG                         GTGATTTGGTAACATGGCTGCCCGTTTCGCTTTAGTGATGCTGGCCACCAT
genomic: AGCAATAACCGCGTGCTGAGCTCTACAGTCTGCTCTGTGCTACTGAATCGgtaatctctc ... attttcgcagGTGATTTGGTAACATGGCTGCCCGTTTCGCTTTAGTGATGCTGGCCACCAT
EST: gi|162236315|gb|FC411434.1|FC411434
EST:     AGCAATAACCGCGTGCTGAGCTCTACAGTCTGCTCTGTGCTACTGAATCG                         GTGATTTGGTAACATGGCTGCCCGTTTCGCTTTAGTGATGCTGGCCACCAT
genomic: AGCAATAACCGCGTGCTGAGCTCTACAGTCTGCTCTGTGCTACTGAATCGgtaatctctc ... attttcgcagGTGATTTGGTAACATGGCTGCCCGTTTCGCTTTAGTGATGCTGGCCACCAT
EST: gi|162226656|gb|FC403754.1|FC403754
EST:     AGCAATAACCGCGTGCTGAGCTCTACAGTCTGCTCTGTGCTACTGAATCG                         GTGATTTGGTAACATGGCTGCCCGTTTCGCTTTAGTGATGCTGGCCACCAT
genomic: AGCAATAACCGCGTGCTGAGCTCTACAGTCTGCTCTGTGCTACTGAATCGgtaatctctc ... attttcgcagGTGATTTGGTAACATGGCTGCCCGTTTCGCTTTAGTGATGCTGGCCACCAT
EST: gi|162235501|gb|FC411831.1|FC411831
EST:     AGCAATAACCGCGTGCTGAGCTCTACAGTCTGCTCTGTGCTACTGAATCG                         GTGATTTGGTAACATGGCTGCCCGTTTCGCTTTAGTGATGCTGGCCACCAT
genomic: AGCAATAACCGCGTGCTGAGCTCTACAGTCTGCTCTGTGCTACTGAATCGgtaatctctc ... attttcgcagGTGATTTGGTAACATGGCTGCCCGTTTCGCTTTAGTGATGCTGGCCACCAT
EST: gi|162153973|gb|FC329480.1|FC329480
EST:     AGCAATAACCGCGTGCTGAGCTCTACAGTCTGCTCTGTGCTACTGAATCG                         GTGATTTGGTAACATGGCTGCCCGTTTCGCTTTAGTGATGCTGGCCACCAT
genomic: AGCAATAACCGCGTGCTGAGCTCTACAGTCTGCTCTGTGCTACTGAATCGgtaatctctc ... attttcgcagGTGATTTGGTAACATGGCTGCCCGTTTCGCTTTAGTGATGCTGGCCACCAT
EST: gi|162226657|gb|FC403755.1|FC403755
EST:     AGCAATAACCGCGTGCTGAGCTCTACAGTCTGCTCTGTGCTACTGAATCG                         GTGATTTGGTAACATGGCTGCCCGTTTCGCTTTAGTGATGCTGGCCACCAT
genomic: AGCAATAACCGCGTGCTGAGCTCTACAGTCTGCTCTGTGCTACTGAATCGgtaatctctc ... attttcgcagGTGATTTGGTAACATGGCTGCCCGTTTCGCTTTAGTGATGCTGGCCACCAT
EST: gi|67570374|gb|BJ943198.1|BJ943198
EST:     AGCAATAACCGCGTGCTGAGCTCTACAGTCTGCTCTGTGCTACTGAATCG                         GTGATTTGGTAACATGGCTGCCCGTTTCGCTTTAGTGATGCTGGCCACCAT
genomic: AGCAATAACCGCGTGCTGAGCTCTACAGTCTGCTCTGTGCTACTGAATCGgtaatctctc ... attttcgcagGTGATTTGGTAACATGGCTGCCCGTTTCGCTTTAGTGATGCTGGCCACCAT
EST: gi|18366130|gb|BJ198208.1|BJ198208
EST:     AGCAATAACCGCGTGCTGAGCTCTACAGTCTGCTCTGTGCTACTGAATCG                         GTGATTTGGTAACATGGCTGCCCGTTTCGCTTTAGTGATGCTGGCCACCAT
genomic: AGCAATAACCGCGTGCTGAGCTCTACAGTCTGCTCTGTGCTACTGAATCGgtaatctctc ... attttcgcagGTGATTTGGTAACATGGCTGCCCGTTTCGCTTTAGTGATGCTGGCCACCAT
EST: gi|162227826|gb|FC403976.1|FC403976
EST:     AGCAATAACCGCGTGCTGAGCTCTACAGTCTGCTCTGTGCTACTGAATCG                         GTGATTTGGTAACATGGCTGCCCGTTTCGCTTTAGTGATGCTGGCCACCAT
genomic: AGCAATAACCGCGTGCTGAGCTCTACAGTCTGCTCTGTGCTACTGAATCGgtaatctctc ... attttcgcagGTGATTTGGTAACATGGCTGCCCGTTTCGCTTTAGTGATGCTGGCCACCAT
EST: gi|162224900|gb|FC401108.1|FC401108
EST:     AGCAATAACCGCGTGCTGAGCTCTACAGTCTGCTCTGTGCTACTGAATCG                         GTGATTTGGTAACATGGCTGCCCGTTTCGCTTTAGTGATGCTGGCCACCAT
genomic: AGCAATAACCGCGTGCTGAGCTCTACAGTCTGCTCTGTGCTACTGAATCGgtaatctctc ... attttcgcagGTGATTTGGTAACATGGCTGCCCGTTTCGCTTTAGTGATGCTGGCCACCAT
EST: gi|6166838|gb|AW145102.1|AW145102
EST:     AGCAATAACCGCGTGCTGAGCTCTACAGTCTGCTCTGTGCTACTGAATCG                         GTGATTTGGTAACATGGCTGCCCGTTTCGCTTTAGTGATGCTGGCCACCAT
genomic: AGCAATAACCGCGTGCTGAGCTCTACAGTCTGCTCTGTGCTACTGAATCGgtaatctctc ... attttcgcagGTGATTTGGTAACATGGCTGCCCGTTTCGCTTTAGTGATGCTGGCCACCAT
EST: gi|18368035|gb|BJ200119.1|BJ200119
EST:     AGCAATAACCGCGTGCTGAGCTCTACAGTCTGCTCTGTGCTACTGAATCG                         GTGATTTGGTAACATGGCTGCCCGTTTCGCTTTAGTGATGCTGGCCACCAT
genomic: AGCAATAACCGCGTGCTGAGCTCTACAGTCTGCTCTGTGCTACTGAATCGgtaatctctc ... attttcgcagGTGATTTGGTAACATGGCTGCCCGTTTCGCTTTAGTGATGCTGGCCACCAT
EST: gi|18365384|gb|BJ197459.1|BJ197459
EST:     AGCAATAACCGCGTGCTGAGCTCTACAGTCTGCTCTGTGCTACTGAATCG                         GTGATTTGGTAACATGGCTGCCCGTTTCGCTTTAGTGATGCTGGCCACCAT
genomic: AGCAATAACCGCGTGCTGAGCTCTACAGTCTGCTCTGTGCTACTGAATCGgtaatctctc ... attttcgcagGTGATTTGGTAACATGGCTGCCCGTTTCGCTTTAGTGATGCTGGCCACCAT
EST: gi|162222402|gb|FC397162.1|FC397162
EST:     AGCAATAACCGCGTGCTGAGCTCTACAGTCTGCTCTGTGCTACTGAATCG                         GTGATTTGGTAACATGGCTGCCCGTTTCGCTTTAGTGATGCTGGCCACCAT
genomic: AGCAATAACCGCGTGCTGAGCTCTACAGTCTGCTCTGTGCTACTGAATCGgtaatctctc ... attttcgcagGTGATTTGGTAACATGGCTGCCCGTTTCGCTTTAGTGATGCTGGCCACCAT
EST: gi|162215042|gb|FC391330.1|FC391330
EST:     AGCAATAACCGCGTGCTGAGCTCTACAGTCTGCTCTGTGCTACTGAATCG                         GTGATTTGGTAACATGGCTGCCCGTTTCGCTTTAGTGATGCTGGCCACCAT
genomic: AGCAATAACCGCGTGCTGAGCTCTACAGTCTGCTCTGTGCTACTGAATCGgtaatctctc ... attttcgcagGTGATTTGGTAACATGGCTGCCCGTTTCGCTTTAGTGATGCTGGCCACCAT
EST: gi|162214151|gb|FC390197.1|FC390197
EST:     AGCAATAACCGCGTGCTGAGCTCTACAGTCTGCTCTGTGCTACTGAATCG                         GTGATTTGGTAACATGGCTGCCCGTTTCGCTTTAGTGATGCTGGCCACCAT
genomic: AGCAATAACCGCGTGCTGAGCTCTACAGTCTGCTCTGTGCTACTGAATCGgtaatctctc ... attttcgcagGTGATTTGGTAACATGGCTGCCCGTTTCGCTTTAGTGATGCTGGCCACCAT
EST: gi|162240616|gb|FC419159.1|FC419159
EST:     AGCAATAACCGCGTGCTGAGCTCTACAGTCTGCTCTGTGCTACTGAATCG                         GTGATTTGGTAACATGGCTGCCCGTTTCGCTTTAGTGATGCTGGCCACCAT
genomic: AGCAATAACCGCGTGCTGAGCTCTACAGTCTGCTCTGTGCTACTGAATCGgtaatctctc ... attttcgcagGTGATTTGGTAACATGGCTGCCCGTTTCGCTTTAGTGATGCTGGCCACCAT
EST: gi|162240615|gb|FC419158.1|FC419158
EST:     AGCAATAACCGCGTGCTGAGCTCTACAGTCTGCTCTGTGCTACTGAATCG                         GTGATTTGGTAACATGGCTGCCCGTTTCGCTTTAGTGATGCTGGCCACCAT
genomic: AGCAATAACCGCGTGCTGAGCTCTACAGTCTGCTCTGTGCTACTGAATCGgtaatctctc ... attttcgcagGTGATTTGGTAACATGGCTGCCCGTTTCGCTTTAGTGATGCTGGCCACCAT
EST: gi|162249690|gb|FC426518.1|FC426518
EST:     CTGTGCTACTGAATCG                         GTGATTTGGTAACATGGCTGCCCGTTTCGCTTTAGTGATGCTGGCCACCAT
genomic: CTGTGCTACTGAATCGgtaatctctc ... attttcgcagGTGATTTGGTAACATGGCTGCCCGTTTCGCTTTAGTGATGCTGGCCACCAT
EST: gi|162240474|gb|FC419329.1|FC419329
EST:     AGCAATAACCGCGTGCTGAGCTCTACAGTCTGCTCTGTGCTACTGAATCG                         GTGATTTGGTAACATGGCTGCCCGTTTCGCTTTAGTGATGCTGGCCACCAT
genomic: AGCAATAACCGCGTGCTGAGCTCTACAGTCTGCTCTGTGCTACTGAATCGgtaatctctc ... attttcgcagGTGATTTGGTAACATGGCTGCCCGTTTCGCTTTAGTGATGCTGGCCACCAT
EST: gi|162211347|gb|FC387577.1|FC387577
EST:     AGCAATAACCGCGTGCTGAGCTCTACAGTCTGCTCTGTGCTACTGAATCG                         GTGATTTGGTAACATGGCTGCCCGTTTCGCTTTAGTGATGCTGGCCACCAT
genomic: AGCAATAACCGCGTGCTGAGCTCTACAGTCTGCTCTGTGCTACTGAATCGgtaatctctc ... attttcgcagGTGATTTGGTAACATGGCTGCCCGTTTCGCTTTAGTGATGCTGGCCACCAT
EST: gi|162204985|gb|FC380667.1|FC380667
EST:     AGCAATAACCGCGTGCTGAGCTCTACAGTCTGCTCTGTGCTACTGAATCG                         GTGATTTGGTAACATGGCTGCCCGTTTCGCTTTAGTGATGCTGGCCACCAT
genomic: AGCAATAACCGCGTGCTGAGCTCTACAGTCTGCTCTGTGCTACTGAATCGgtaatctctc ... attttcgcagGTGATTTGGTAACATGGCTGCCCGTTTCGCTTTAGTGATGCTGGCCACCAT
EST: gi|18374894|gb|BJ206472.1|BJ206472
EST:     AGCAATAACCGCGTGCTGAGCTCTACAGTCTGCTCTGTGCTACTGAATCG                         GTGATTTGGTAACATGGCTGCCCGTTTCGCTTTAGTGATGCTGGCCACCAT
genomic: AGCAATAACCGCGTGCTGAGCTCTACAGTCTGCTCTGTGCTACTGAATCGgtaatctctc ... attttcgcagGTGATTTGGTAACATGGCTGCCCGTTTCGCTTTAGTGATGCTGGCCACCAT
EST: gi|162249691|gb|FC426519.1|FC426519
EST:     AGCAATAACCGCGTGCTGAGCTCTACAGTCTGCTCTGTGCTACTGAATCG                         GTGATTTGGTAACATGGCTGCCCGTTTCGCTTTAGTGATGCTGGCCACCAT
genomic: AGCAATAACCGCGTGCTGAGCTCTACAGTCTGCTCTGTGCTACTGAATCGgtaatctctc ... attttcgcagGTGATTTGGTAACATGGCTGCCCGTTTCGCTTTAGTGATGCTGGCCACCAT
EST: gi|15261521|gb|BI436831.1|BI436831
EST:     AGCAATAACCGCGTGCTGAGCTCTACAGTCTGCTCTGTGCTACTGAATCG                         GTGATTTGGTAACATGGCTGCCCGTTTCGCTTTAGTGATGCTGGCCACCAT
genomic: AGCAATAACCGCGTGCTGAGCTCTACAGTCTGCTCTGTGCTACTGAATCGgtaatctctc ... attttcgcagGTGATTTGGTAACATGGCTGCCCGTTTCGCTTTAGTGATGCTGGCCACCAT
EST: gi|37842963|gb|BJ600971.1|BJ600971
EST:     AGCAATAACCGCGTGCTGAGCTNTACAGTCTGCTCTGTGNTACTGAATCG                         GTGATTTGGTAACATGGCTGCCCGTTTCGCTTTAGTGATGCTGGCCACCAT
genomic: AGCAATAACCGCGTGCTGAGCTCTACAGTCTGCTCTGTGCTACTGAATCGgtaatctctc ... attttcgcagGTGATTTGGTAACATGGCTGCCCGTTTCGCTTTAGTGATGCTGGCCACCAT
EST: gi|18365665|gb|BJ197742.1|BJ197742
EST:     AGCAATAACCGCGTGCTGAGCTCTACAGTCTGCTCTGTGCTACTGAATCG                         GTGATTTGGTAACATGGCTGCCCGTTTCGCTTTAGTGATGCTGGCCACCAT
genomic: AGCAATAACCGCGTGCTGAGCTCTACAGTCTGCTCTGTGCTACTGAATCGgtaatctctc ... attttcgcagGTGATTTGGTAACATGGCTGCCCGTTTCGCTTTAGTGATGCTGGCCACCAT
EST: gi|18372006|gb|BJ203608.1|BJ203608
EST:     AGCAATAACCGCGTGCTGAGCTCTACAGTCTGCTCTGTGCTACTGAATCG                         GTGATTTGGTAACATGGCTGCCCGTTTCGCTTTAGTGATGCTGGCCACCAT
genomic: AGCAATAACCGCGTGCTGAGCTCTACAGTCTGCTCTGTGCTACTGAATCGgtaatctctc ... attttcgcagGTGATTTGGTAACATGGCTGCCCGTTTCGCTTTAGTGATGCTGGCCACCAT
EST: gi|162250795|gb|FC426839.1|FC426839
EST:     AGCAATAACCGCGTGCTGAGCTCTACAGTCTGCTCTGTGCTACTGAATCG                         GTGATTTGGTAACATGGCTGCCCGTTTCGCTTTAGTGATGCTGGCCACCAT
genomic: AGCAATAACCGCGTGCTGAGCTCTACAGTCTGCTCTGTGCTACTGAATCGgtaatctctc ... attttcgcagGTGATTTGGTAACATGGCTGCCCGTTTCGCTTTAGTGATGCTGGCCACCAT
EST: gi|162222401|gb|FC397161.1|FC397161
EST:     TGTGCTACTGAATCG                         GTGATTTGGTAACATGGCTGCCCGTTTCGCTTTAGTGATGCTGGCCACCAT
genomic: TGTGCTACTGAATCGgtaatctctc ... attttcgcagGTGATTTGGTAACATGGCTGCCCGTTTCGCTTTAGTGATGCTGGCCACCAT
EST: gi|18363835|gb|BJ195907.1|BJ195907
EST:     AGCAATAACCGCGTGCTGAGCTCTACAGTCTGCTCTGTGCTACTGAATCG                         GTGATTTGGTAACATGGCTGCCCGTTTCGCTTTAGTGATGCTGGCCACCAT
genomic: AGCAATAACCGCGTGCTGAGCTCTACAGTCTGCTCTGTGCTACTGAATCGgtaatctctc ... attttcgcagGTGATTTGGTAACATGGCTGCCCGTTTCGCTTTAGTGATGCTGGCCACCAT
EST: gi|162210374|gb|FC386462.1|FC386462
EST:     GTGCTACTGAATCG                         GTGATTTGGTAACATGGCTGCCCGTTTCGCTTTAGTGATGCTGGCCACCAT
genomic: GTGCTACTGAATCGgtaatctctc ... attttcgcagGTGATTTGGTAACATGGCTGCCCGTTTCGCTTTAGTGATGCTGGCCACCAT
EST: gi|18371517|gb|BJ203119.1|BJ203119
EST:     ANCAATAACCGCGTGCTGAGCTCTACAGTCTGCTCTGTGCTACTGAATCG                         GTGATTTGGTAACATGGCTGCCCGTTTCGCTTTATTGATGCTGGCCACCAT
genomic: AGCAATAACCGCGTGCTGAGCTCTACAGTCTGCTCTGTGCTACTGAATCGgtaatctctc ... attttcgcagGTGATTTGGTAACATGGCTGCCCGTTTCGCTTTAGTGATGCTGGCCACCAT
EST: gi|18363193|gb|BJ195265.1|BJ195265
EST:     AGCAATAACCGCGTGCTGAGCTCTACAGTCTGCTCTGTGCTACTGAATCG                         GTGATTTGGTAACATGGCTGCCCGTTTCGCTTTAGTGATGCTGGCCACCAT
genomic: AGCAATAACCGCGTGCTGAGCTCTACAGTCTGCTCTGTGCTACTGAATCGgtaatctctc ... attttcgcagGTGATTTGGTAACATGGCTGCCCGTTTCGCTTTAGTGATGCTGGCCACCAT
EST: gi|162236691|gb|FC413786.1|FC413786
EST:     AGCAATAACCGCGTGCTGAGCTCTACAGTCTGCTCTGTGCTACTGAATCG                         GTGATTTGGTAACATGGCTGCCCGTTTCGCTTTAGTGATGCTGGCCACCAT
genomic: AGCAATAACCGCGTGCTGAGCTCTACAGTCTGCTCTGTGCTACTGAATCGgtaatctctc ... attttcgcagGTGATTTGGTAACATGGCTGCCCGTTTCGCTTTAGTGATGCTGGCCACCAT
EST: gi|162225929|gb|FC400960.1|FC400960
EST:     GTGCTACTGAATCG                         GTGATTTGGTAACATGGCTGCCCGTTTCGCTTTAGTGATGCTGGCCACCAT
genomic: GTGCTACTGAATCGgtaatctctc ... attttcgcagGTGATTTGGTAACATGGCTGCCCGTTTCGCTTTAGTGATGCTGGCCACCAT
EST: gi|162204986|gb|FC380668.1|FC380668
EST:     AGCAATAACCGCGTGCTGAGCTCTACAGTCTGCTCTGTGCTACTGAATCG                         GTGATTTGGTAACATGGCTGCCCGTTTCGCTTTAGTGATGCTGGCCACCAT
genomic: AGCAATAACCGCGTGCTGAGCTCTACAGTCTGCTCTGTGCTACTGAATCGgtaatctctc ... attttcgcagGTGATTTGGTAACATGGCTGCCCGTTTCGCTTTAGTGATGCTGGCCACCAT

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 9 (upstream exon), 27 (downstream exon)
Score: 1

AGTGAGGAGTCATTCAGTGTTCAGGTACAGGATAGTTCGGGTGATATCTGAGCAATAACCGCGTGCTGAGCTCTACAGTCTGCTCTGTGCTACTGAATCGgtaatctctc ... attttcgcagGTGATTTGGTAACATGGCTGCCCGTTTCGCTTTAGTGATGCTGGCCACCATGGCCATGGTGTATGCTGCCCAGGCCGGTGACCCAGAGCTCACCACCGAC




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