1 5' 3' | 2 5' 3' | 3 5' 3' |
ACTGGAGCAGAAGATGAAAGGGACTTCGTTCACAACAAGgtatgcgttatcccgcaaaggaaacataaccgaggtgaagttgatgtaccagtttacatcactgatggtcttattctgaactatgtgtatggttggtattgcag
species | Physcomitrella patens |
transcript | PP1S97_54V6.4 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: ACTGGAGCAGAAGATGAAAGGGACTTCGTTCACAACAAG CTTCAAGCTCTGAGCAACACGCATCTGAGTAGTATGGTTGAGTTGTATTCGEST: gi|18332442|gb|BJ164455.1|BJ164455
genomic: ACTGGAGCAGAAGATGAAAGGGACTTCGTTCACAACAAGgtatgcgtta ... ggtattgcagCTTCAAGCTCTGAGCAACACGCATCTGAGTAGTATGGTTGAGTTGTATTCG
EST: ACTGGAGCAGAAGATGAAAGGGACTTCGTTCACAACAAG CTTCAAGCTCTGAGCAACACGCATCTGAGTAGTATGGTTGAGTTGTATTCGEST: gi|208388641|gb|DC953431.1|DC953431
genomic: ACTGGAGCAGAAGATGAAAGGGACTTCGTTCACAACAAGgtatgcgtta ... ggtattgcagCTTCAAGCTCTGAGCAACACGCATCTGAGTAGTATGGTTGAGTTGTATTCG
EST: ACTGGAGCAGAAGATGAAAGGGACTTCGTTCACAACAAG CTTCAAGCTCTGAGCAACACGCATCTGAGTAGTATGGTTGAGTTGTATTCGEST: gi|67696509|gb|BJ956742.1|BJ956742
genomic: ACTGGAGCAGAAGATGAAAGGGACTTCGTTCACAACAAGgtatgcgtta ... ggtattgcagCTTCAAGCTCTGAGCAACACGCATCTGAGTAGTATGGTTGAGTTGTATTCG
EST: ACTGGAGCAGAAGATGAAAGGGACTTCGTTCACAACAAG CTTCAAGCTCTGAGCAACACGCATCTGAGTAGTATGGTTGAGTTGTATTCGEST: gi|37835663|gb|BJ593675.1|BJ593675
genomic: ACTGGAGCAGAAGATGAAAGGGACTTCGTTCACAACAAGgtatgcgtta ... ggtattgcagCTTCAAGCTCTGAGCAACACGCATCTGAGTAGTATGGTTGAGTTGTATTCG
EST: ACTGGAGCAGAAGATGAAAGGGACTTCGTTCACAACAAG CTTCAAGCTCTGAGCAACACGCATCTGAGTAGTATGGTTGAGTTGTATTCGEST: gi|18337853|gb|BJ169877.1|BJ169877
genomic: ACTGGAGCAGAAGATGAAAGGGACTTCGTTCACAACAAGgtatgcgtta ... ggtattgcagCTTCAAGCTCTGAGCAACACGCATCTGAGTAGTATGGTTGAGTTGTATTCG
EST: ACTGGAGCAGAAGATGAAAGGGACTTCGTTCACAACAAG CTTCAAGCTCTGAGCAACACGCATCTGAGTAGTATGGTTGAGTTGTATTCGEST: gi|162249476|gb|FC426746.1|FC426746
genomic: ACTGGAGCAGAAGATGAAAGGGACTTCGTTCACAACAAGgtatgcgtta ... ggtattgcagCTTCAAGCTCTGAGCAACACGCATCTGAGTAGTATGGTTGAGTTGTATTCG
EST: ACTGGAGCAGAAGATGAAAGGGACTTCGTTCACAACAAG CTTCAAGCTCTGAGCAACACGCATCTGAGTAGTATGGTTGAGTTGTATTCGEST: gi|18338064|gb|BJ170088.1|BJ170088
genomic: ACTGGAGCAGAAGATGAAAGGGACTTCGTTCACAACAAGgtatgcgtta ... ggtattgcagCTTCAAGCTCTGAGCAACACGCATCTGAGTAGTATGGTTGAGTTGTATTCG
EST: ACTGGAGCAGAAGATGAAAGGGACTTCGTTCACAACAAG CTTCAAGCTCTGAGCAACACGCATCTGAGTAGTATGGTTGAGTTGTATTCGEST: gi|67574156|gb|BJ946980.1|BJ946980
genomic: ACTGGAGCAGAAGATGAAAGGGACTTCGTTCACAACAAGgtatgcgtta ... ggtattgcagCTTCAAGCTCTGAGCAACACGCATCTGAGTAGTATGGTTGAGTTGTATTCG
EST: ACTGGAGCAGAAGATGAAAGGGACTTCGTTCACAACAAG CTTCAAGCTCTGAGCAACACGCATCTGAGTAGTATGGTTGAGTTGTATTCGEST: gi|162248874|gb|FC422881.1|FC422881
genomic: ACTGGAGCAGAAGATGAAAGGGACTTCGTTCACAACAAGgtatgcgtta ... ggtattgcagCTTCAAGCTCTGAGCAACACGCATCTGAGTAGTATGGTTGAGTTGTATTCG
EST: ACTGGAGCAGAAGATGAAAGGGACTTCGTTCACAACAAG CTTCAAGCTCTGAGCAACACGCATCTGAGTAGTATGGTTGAGTTGTATTCGEST: gi|18341780|gb|BJ173815.1|BJ173815
genomic: ACTGGAGCAGAAGATGAAAGGGACTTCGTTCACAACAAGgtatgcgtta ... ggtattgcagCTTCAAGCTCTGAGCAACACGCATCTGAGTAGTATGGTTGAGTTGTATTCG
EST: ACTGGAGCAGAAGATGAAAGGGACTTCGTTCACAACAAG CTTCAAGCTCTGAGCAACACGCATCTGAGTAGTATGGTTGAGTTGTATTCGEST: gi|37850242|gb|BJ608250.1|BJ608250
genomic: ACTGGAGCAGAAGATGAAAGGGACTTCGTTCACAACAAGgtatgcgtta ... ggtattgcagCTTCAAGCTCTGAGCAACACGCATCTGAGTAGTATGGTTGAGTTGTATTCG
EST: ACTGGAGCAGAAGATGAAAGGGACTTCGTTCACAACAAG CTTCAAGCTCTGAGCAACACGCATCTGAGTAGTATGGTTGAGTTGTATTCGEST: gi|18364771|gb|BJ196844.1|BJ196844
genomic: ACTGGAGCAGAAGATGAAAGGGACTTCGTTCACAACAAGgtatgcgtta ... ggtattgcagCTTCAAGCTCTGAGCAACACGCATCTGAGTAGTATGGTTGAGTTGTATTCG
EST: ACTGGAGCAGAAGATGAAAGGGACTTCGTTCACAACAAG CTTCAAGCTCTGAGCAACACGCATCTGAGTAGTATGGTTGAGTTGTATTCGEST: gi|37845267|gb|BJ603275.1|BJ603275
genomic: ACTGGAGCAGAAGATGAAAGGGACTTCGTTCACAACAAGgtatgcgtta ... ggtattgcagCTTCAAGCTCTGAGCAACACGCATCTGAGTAGTATGGTTGAGTTGTATTCG
EST: ACTGGAGCAGAAGATGAAAGGGACTTCGTTCACAACAAG CTTCAAGCTCTGAGCAACACGCATCTGAGTAGTATGGTTGAGTTGTATTCGEST: gi|37853392|gb|BJ611400.1|BJ611400
genomic: ACTGGAGCAGAAGATGAAAGGGACTTCGTTCACAACAAGgtatgcgtta ... ggtattgcagCTTCAAGCTCTGAGCAACACGCATCTGAGTAGTATGGTTGAGTTGTATTCG
EST: ACTGGAGCAGAAGATGAAAGGGACTTCGTTCACAACAAG CTTCAAGCTCTGAGCAACACGCATCTGAGTAGTATGGTTGAGTTGTATTCGEST: gi|18354273|gb|BJ186329.1|BJ186329
genomic: ACTGGAGCAGAAGATGAAAGGGACTTCGTTCACAACAAGgtatgcgtta ... ggtattgcagCTTCAAGCTCTGAGCAACACGCATCTGAGTAGTATGGTTGAGTTGTATTCG
EST: ACTGGAGCAGAAGATGAAAGGGACTTCGTTCACAACAAG CTTCAAGCTCTGAGCAACACGCATCTGAGTAGTATGGTTGAGTTGTATTCGEST: gi|67697554|gb|BJ957787.1|BJ957787
genomic: ACTGGAGCAGAAGATGAAAGGGACTTCGTTCACAACAAGgtatgcgtta ... ggtattgcagCTTCAAGCTCTGAGCAACACGCATCTGAGTAGTATGGTTGAGTTGTATTCG
EST: ACTGGAGCAGAAGATGAAAGGGACTTCGTTCACAACAAG CTTCAAGCTCTGAGCAACACGCATCTGAGTAGTATGGTTGAGTTGTATTCGEST: gi|18347001|gb|BJ179047.1|BJ179047
genomic: ACTGGAGCAGAAGATGAAAGGGACTTCGTTCACAACAAGgtatgcgtta ... ggtattgcagCTTCAAGCTCTGAGCAACACGCATCTGAGTAGTATGGTTGAGTTGTATTCG
EST: ACTGGAGCAGAAGATGAAAGGGACTTCGTTCACAACAAG CTTCAAGCTCTGAGCAACACGCATCTGAGTAGTATGGTTGAGTTGTATTCGEST: gi|162258316|gb|FC434243.1|FC434243
genomic: ACTGGAGCAGAAGATGAAAGGGACTTCGTTCACAACAAGgtatgcgtta ... ggtattgcagCTTCAAGCTCTGAGCAACACGCATCTGAGTAGTATGGTTGAGTTGTATTCG
EST: ACTGGAGCAGAAGATGAAAGGGACTTCGTTCACAACAAG CTTCAAGCTCTGAGCAACACGCATCTGAGTAGTATGGTTGAGTTGTATTCGEST: gi|162210551|gb|FC386847.1|FC386847
genomic: ACTGGAGCAGAAGATGAAAGGGACTTCGTTCACAACAAGgtatgcgtta ... ggtattgcagCTTCAAGCTCTGAGCAACACGCATCTGAGTAGTATGGTTGAGTTGTATTCG
EST: ACTGGAGCAGAAGATGAAAGGGACTTCGTTCACAACAAG CTTCAAGCTCTGAGCAACACGCATCTGAGTAGTATGGTTGAGTTGTATTCGEST: gi|37835745|gb|BJ593757.1|BJ593757
genomic: ACTGGAGCAGAAGATGAAAGGGACTTCGTTCACAACAAGgtatgcgtta ... ggtattgcagCTTCAAGCTCTGAGCAACACGCATCTGAGTAGTATGGTTGAGTTGTATTCG
EST: ACTGGAGCAGAAGATGAAAGGGACTTCGTTCACAACAAG CTTCAAGCTCTGAGCAACACGCATCTGAGTAGTATGGTTGAGTTGTATTCGEST: gi|162224213|gb|FC399277.1|FC399277
genomic: ACTGGAGCAGAAGATGAAAGGGACTTCGTTCACAACAAGgtatgcgtta ... ggtattgcagCTTCAAGCTCTGAGCAACACGCATCTGAGTAGTATGGTTGAGTTGTATTCG
EST: ACTGGAGCAGAAGATGAAAGGGACTTCGTTCACAACAAG CTTCAAGCTCTGAGCAACACGCATCTGAGTAGTATGGTTGAGTTGTATTCGEST: gi|208368661|gb|DC947936.1|DC947936
genomic: ACTGGAGCAGAAGATGAAAGGGACTTCGTTCACAACAAGgtatgcgtta ... ggtattgcagCTTCAAGCTCTGAGCAACACGCATCTGAGTAGTATGGTTGAGTTGTATTCG
EST: ACTGGAGCAGAAGATGAAAGGGACTTCGTTCACAACAAG CTTCAAGCTCTGAGCAACACGCATCTGAGTAGTATGGTTGAGTTGTATTCGEST: gi|162258317|gb|FC434244.1|FC434244
genomic: ACTGGAGCAGAAGATGAAAGGGACTTCGTTCACAACAAGgtatgcgtta ... ggtattgcagCTTCAAGCTCTGAGCAACACGCATCTGAGTAGTATGGTTGAGTTGTATTCG
EST: ACTGGAGCAGAAGATGAAAGGGACTTCGTTCACAACAAG CTTCAAGCTCTGAGCAACACGCATCTGAGTAGTATGGTTGAGTTGTATTCGEST: gi|18354193|gb|BJ186249.1|BJ186249
genomic: ACTGGAGCAGAAGATGAAAGGGACTTCGTTCACAACAAGgtatgcgtta ... ggtattgcagCTTCAAGCTCTGAGCAACACGCATCTGAGTAGTATGGTTGAGTTGTATTCG
EST: ACTGGAGCAGAAGATGAAAGGGACTTCGTTCACAACAAG CTTCAAGCTCTGAGCAACACGCATCTGAGTAGTATGGTTGAGTTGTATTCGEST: gi|67692998|gb|BJ953231.1|BJ953231
genomic: ACTGGAGCAGAAGATGAAAGGGACTTCGTTCACAACAAGgtatgcgtta ... ggtattgcagCTTCAAGCTCTGAGCAACACGCATCTGAGTAGTATGGTTGAGTTGTATTCG
EST: ACTGGAGCAGAAGATGAAAGGGACTTCGTTCACAACAAG CTTCAAGCTCTGAGCAACACGCATCTGAGTAGTATGGTTGAGTTGTATTCGEST: gi|67573124|gb|BJ945948.1|BJ945948
genomic: ACTGGAGCAGAAGATGAAAGGGACTTCGTTCACAACAAGgtatgcgtta ... ggtattgcagCTTCAAGCTCTGAGCAACACGCATCTGAGTAGTATGGTTGAGTTGTATTCG
EST: ACTGGAGCAGAAGATGAAAGGGACTTCGTTCACAACAAG CTTCAAGCTCTGAGCAACACGCATCTGAGTAGTATGGTTGAGTTGTATTCGEST: gi|162249477|gb|FC426747.1|FC426747
genomic: ACTGGAGCAGAAGATGAAAGGGACTTCGTTCACAACAAGgtatgcgtta ... ggtattgcagCTTCAAGCTCTGAGCAACACGCATCTGAGTAGTATGGTTGAGTTGTATTCG
EST: ACTGGAGCAGAAGATGAAAGGGACTTCGTTCACAACAAG CTTCAAGCTCTGAGCAACACGCATCTGAGTAGTATGGTTGAGTTGTATTCGEST: gi|67569732|gb|BJ942556.1|BJ942556
genomic: ACTGGAGCAGAAGATGAAAGGGACTTCGTTCACAACAAGgtatgcgtta ... ggtattgcagCTTCAAGCTCTGAGCAACACGCATCTGAGTAGTATGGTTGAGTTGTATTCG
EST: ACTGGAGCAGAAGATGAAAGGGACTTCGTTCACAACAAG CTTCAAGCTCTGAGCAACACGCATCTGAGTAGTATGGTTGAGTTGTATTCGEST: gi|162210550|gb|FC386846.1|FC386846
genomic: ACTGGAGCAGAAGATGAAAGGGACTTCGTTCACAACAAGgtatgcgtta ... ggtattgcagCTTCAAGCTCTGAGCAACACGCATCTGAGTAGTATGGTTGAGTTGTATTCG
EST: ACTGGAGCAGAAGATGAAAGGGACTTCGTTCACAACAAG CTTCAAGCTCTGAGCAACACGCATCTGAGTAGTATGGTTGAGTTGTATTCGEST: gi|67508263|gb|BJ941132.1|BJ941132
genomic: ACTGGAGCAGAAGATGAAAGGGACTTCGTTCACAACAAGgtatgcgtta ... ggtattgcagCTTCAAGCTCTGAGCAACACGCATCTGAGTAGTATGGTTGAGTTGTATTCG
EST: ACTGGAGCAGAAGATGAAAGGGACTTCGTTCACAACAAG CTTCAAGCTCTGAGCAACACGCATCTGAGTAGTATGGTTGAGTTGTATTCG
genomic: ACTGGAGCAGAAGATGAAAGGGACTTCGTTCACAACAAGgtatgcgtta ... ggtattgcagCTTCAAGCTCTGAGCAACACGCATCTGAGTAGTATGGTTGAGTTGTATTCG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ACTGGAGCAGAAGATGAAAGGGACTTCGTTCACAACAAGgtatgcgttatcccgcaaaggaaacataaccgaggtgaagttgatgtaccagtttacatcactgatggtcttattctgaactatgtgtatggttggtattgcag
- GGAGCA
- - GAGCAG
- - - - - AAGATG