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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...cgtgcatcctcttagctagggttgtgcatatcgctcttctgttgtttacatgtgtacgcacaagtgcgctcgtaataattcttggttgagttttgcacagTTTGTTAAGAACGATGTAACGTCTGCAATCGGCGTTCTTAAGGGAGGCTTCGAAATTTATGGGTGTGAAGTATTTCGACTTATTCGACGCTAGTGCCGAA

Basic information

species Physcomitrella patens
transcript PP1S97_54V6.2
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18330249|gb|BJ162255.1|BJ162255
EST:     GATGCCGGAATGCGCACCCTTTGCTCTGTTTGAGTCTGTACAGATAGCAG                         TTTGTTAAGAACGATGTAACGTCTGCAATCGGCGTTCTTAAGGGAGGCTTC
genomic: GATGCCGGAATGCGCACCCTTTGCTCTGTTTGAGTCTGTACAGATAGCAGgtagtgccgc ... ttttgcacagTTTGTTAAGAACGATGTAACGTCTGCAATCGGCGTTCTTAAGGGAGGCTTC
EST: gi|162224213|gb|FC399277.1|FC399277
EST:     GATGCCGGAATGCGCACCCTTTGCTCTGTTTGAGTCTGTACAGATAGCAG                         TTTGTTAAGAACGATGTAACGTCTGCAATCGGCGTTCTTAAGGGAGGCTTC
genomic: GATGCCGGAATGCGCACCCTTTGCTCTGTTTGAGTCTGTACAGATAGCAGgtagtgccgc ... ttttgcacagTTTGTTAAGAACGATGTAACGTCTGCAATCGGCGTTCTTAAGGGAGGCTTC
EST: gi|37853392|gb|BJ611400.1|BJ611400
EST:     CTGTACAGATAGCAG                         TTTGTTAAGAACGATGTAACGTCTGCAATCGGCGTTCTTAAGGGAAGCTTC
genomic: CTGTACAGATAGCAGgtagtgccgc ... ttttgcacagTTTGTTAAGAACGATGTAACGTCTGCAATCGGCGTTCTTAAGGGAGGCTTC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttacatgtgtacgcacaagtgcgctcgtaataattcttggttgagttttgcacagTTTGTTAAGAACGATGTAACGTCTGCAATCGGCGTTCTTAAGGGAGGCTTCGAAATTTATGGGTGTGAAGTATTTCGACTTATTCGACGCTAGTGCCGAA
                           taataattctt  TA-rich tract