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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagcttcctcccttgttgtgaggttaaactgtagcttccaatgccatctgccaatgctttaatcggacaacgtgcttgaaggaaacaattataggcacatttgaaattctgcatgtaagatgacattctctcgtagggttttcatttccaatggtattggtttagGTATTGGGCGGAGCACACGAATCAATGGCCATCTTTCTTCAACATCAACACGCAAGTAGCGCAGGCATTTGGAACCAAGGCCGGGGAAGTCTATGGCACC

Basic information

species Physcomitrella patens
transcript PP1S97_190V6.5
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208380256|gb|DC919092.1|DC919092
EST:     TTGAGGAAGAACACCCCCGCAGCCACTGCCGGCCATGGCTGCACTAACAT                         GTATTGGGCGGAGCACACGAATCAATGNCCATCTTTTCTTCAACATCAACA
genomic: TTGAGGAAGAACACCCCCGCAGCCACTGCCGGCCATGGCTGCACTAACATgtaagcttcc ... attggtttagGTATTGGGCGGAGCACACGAATCAATGGCCATC-TTTCTTCAACATCAACA
EST: gi|67723680|gb|BJ973939.1|BJ973939
EST:     TTGAGGAAGAACACCCCCGCAGCCACTGCCGGCCATGGCTGCACTAACAT                         GTATTGGGCGGAGCACACGAATCAATGGCCATCTTTCTTCAACATCAACAC
genomic: TTGAGGAAGAACACCCCCGCAGCCACTGCCGGCCATGGCTGCACTAACATgtaagcttcc ... attggtttagGTATTGGGCGGAGCACACGAATCAATGGCCATCTTTCTTCAACATCAACAC
EST: gi|67727475|gb|BJ977734.1|BJ977734
EST:     TTGAGGAAGAACACCCCCGCAGCCACTGCCGGCCATGGCTGCACTAACAT                         GTATTGGGCGGAGCACACGAATCAATGGCCATCTTTCTTCAACATCAACAC
genomic: TTGAGGAAGAACACCCCCGCAGCCACTGCCGGCCATGGCTGCACTAACATgtaagcttcc ... attggtttagGTATTGGGCGGAGCACACGAATCAATGGCCATCTTTCTTCAACATCAACAC
EST: gi|67724221|gb|BJ974480.1|BJ974480
EST:     TTGAGGAAGAACACCCCCGCAGCCACTGCCGGCCATGGCTGCACTAACAT                         GTATTGGGCGGAGCACACGAATCAATGGCCATCTTTNTTCAACATCAACAC
genomic: TTGAGGAAGAACACCCCCGCAGCCACTGCCGGCCATGGCTGCACTAACATgtaagcttcc ... attggtttagGTATTGGGCGGAGCACACGAATCAATGGCCATCTTTCTTCAACATCAACAC
EST: gi|67726263|gb|BJ976522.1|BJ976522
EST:     TTGAGGAAGAACACCCCCGCAGCCACTGCCGGCCATGGCTGCACTAACAT                         GTATTGGGCGGAGCACACGAATCAATGGCCATCTTTCTTCAACATCAACAC
genomic: TTGAGGAAGAACACCCCCGCAGCCACTGCCGGCCATGGCTGCACTAACATgtaagcttcc ... attggtttagGTATTGGGCGGAGCACACGAATCAATGGCCATCTTTCTTCAACATCAACAC
EST: gi|67726314|gb|BJ976573.1|BJ976573
EST:     TTGAGGANGAACACCCCCGCAGCCACTGCCGGCCATGGCTGCACTAACAT                         GTATTGGGCGGAGCACATGAATCAATGGCCATCTTTCTTCAACATCAACAC
genomic: TTGAGGAAGAACACCCCCGCAGCCACTGCCGGCCATGGCTGCACTAACATgtaagcttcc ... attggtttagGTATTGGGCGGAGCACACGAATCAATGGCCATCTTTCTTCAACATCAACAC
EST: gi|67725587|gb|BJ975846.1|BJ975846
EST:     TTGAGGAAGAACACCCCCGCAGCCACTGCCGGCCATGGCTGCACTAACAT                         GTATTGGGCGGAGCACACGAATCAATGGCCATCTTTCTTCAACATCAACAC
genomic: TTGAGGAAGAACACCCCCGCAGCCACTGCCGGCCATGGCTGCACTAACATgtaagcttcc ... attggtttagGTATTGGGCGGAGCACACGAATCAATGGCCATCTTTCTTCAACATCAACAC
EST: gi|67725954|gb|BJ976213.1|BJ976213
EST:     TTGAGGAAGAACACCCCCGCAGCCACTGCCGGCCATGGCTGCACTAACAT                         GTATTGGGCGGAGCACACGAATCAATGGCCATCTTTCTTCAACATCAACAC
genomic: TTGAGGAAGAACACCCCCGCAGCCACTGCCGGCCATGGCTGCACTAACATgtaagcttcc ... attggtttagGTATTGGGCGGAGCACACGAATCAATGGCCATCTTTCTTCAACATCAACAC
EST: gi|67725309|gb|BJ975568.1|BJ975568
EST:     CCACTGCCGGCCATGGCTGCACTAACAT                         GTATTGGGCGGAGCACACGAATCAATGGCCATCTTTCTTCAACATCAACAC
genomic: CCACTGCCGGCCATGGCTGCACTAACATgtaagcttcc ... attggtttagGTATTGGGCGGAGCACACGAATCAATGGCCATCTTTCTTCAACATCAACAC
EST: gi|208355155|gb|DC926764.1|DC926764
EST:     NTGAGGAAGAACACCCCNGCAGCCACTGCCGGCCATGGNTGCANTAACAT                         GTATTGGGNGGAGCACACGAATCAATGGCCATCTTTNTTCAACATCAACAC
genomic: TTGAGGAAGAACACCCCCGCAGCCACTGCCGGCCATGGCTGCACTAACATgtaagcttcc ... attggtttagGTATTGGGCGGAGCACACGAATCAATGGCCATCTTTCTTCAACATCAACAC
EST: gi|67727334|gb|BJ977593.1|BJ977593
EST:     TCGAGGAAGAACACCCCCGCAGCCACTGCCGGCCATGGCTGCACTAACAT                         GTATTGGGCGGAGCACACGAATCAATGGCCATCTTTCTTCAACATCAACAC
genomic: TTGAGGAAGAACACCCCCGCAGCCACTGCCGGCCATGGCTGCACTAACATgtaagcttcc ... attggtttagGTATTGGGCGGAGCACACGAATCAATGGCCATCTTTCTTCAACATCAACAC
EST: gi|37825587|gb|BJ583653.1|BJ583653
EST:     TGCCGGCCATGGCTGCACTAACAT                         GTATTGGGCGGAGCACACGAATCAATGGCCATCTTTCTTCAACATCAACAC
genomic: TGCCGGCCATGGCTGCACTAACATgtaagcttcc ... attggtttagGTATTGGGCGGAGCACACGAATCAATGGCCATCTTTCTTCAACATCAACAC
EST: gi|67725771|gb|BJ976030.1|BJ976030
EST:     TTGAGGAAGAACACCCCCGCAGCCACTGCCGGCCATGGCTGCACTAACAT                         GTATTGGGCGGAGCACACGAATCAATGGCCATCTTTCTTCAACATCAACAC
genomic: TTGAGGAAGAACACCCCCGCAGCCACTGCCGGCCATGGCTGCACTAACATgtaagcttcc ... attggtttagGTATTGGGCGGAGCACACGAATCAATGGCCATCTTTCTTCAACATCAACAC
EST: gi|67726379|gb|BJ976638.1|BJ976638
EST:     TTGAGGAAGAACACCCCCGCAGCCACTGCCGGCCATGGCTGCACTAACAT                         GTATTGGGCGGAGCACACGAATCAATGGCCATCTTTCTTCAACATCAACAC
genomic: TTGAGGAAGAACACCCCCGCAGCCACTGCCGGCCATGGCTGCACTAACATgtaagcttcc ... attggtttagGTATTGGGCGGAGCACACGAATCAATGGCCATCTTTCTTCAACATCAACAC
EST: gi|67720480|gb|BJ970739.1|BJ970739
EST:     TTGAGGAAGAACACCCCCGCAGCCACTGCCGGCCATGGCTGCACTAACAT                         GTATTGGGCGGAGCACACGAATCAATGGCCATCTTTCTTCAACATCAACAC
genomic: TTGAGGAAGAACACCCCCGCAGCCACTGCCGGCCATGGCTGCACTAACATgtaagcttcc ... attggtttagGTATTGGGCGGAGCACACGAATCAATGGCCATCTTTCTTCAACATCAACAC
EST: gi|67720550|gb|BJ970809.1|BJ970809
EST:     TTGAGGAAGAACACCCCCGCAGCCACTGCCGGCCATGGCTGCACTAACAT                         GTATTGGGCGGAGCACACGAATCAATGGCCATCTTTCTTCAACATCAACAC
genomic: TTGAGGAAGAACACCCCCGCAGCCACTGCCGGCCATGGCTGCACTAACATgtaagcttcc ... attggtttagGTATTGGGCGGAGCACACGAATCAATGGCCATCTTTCTTCAACATCAACAC
EST: gi|208362756|gb|DC950556.1|DC950556
EST:     TTGAGGAAGAACACCCCCGCAGCCACTGCCGGCCATGGCTGCACTAACAT                         GTATTGGGCGGAGCACACGAATCAATGGCCATCTTTCTTCAACATCAACAC
genomic: TTGAGGAAGAACACCCCCGCAGCCACTGCCGGCCATGGCTGCACTAACATgtaagcttcc ... attggtttagGTATTGGGCGGAGCACACGAATCAATGGCCATCTTTCTTCAACATCAACAC
EST: gi|208381151|gb|DC903041.1|DC903041
EST:     TTGAGGAA-AACACCCCCGCAGCCACTGCCGGCCATGGCTGCACTAACAT                         GTATTGGGCGGA-CACATGANTCA-TGGCCATCTTTCT
genomic: TTGAGGAAGAACACCCCCGCAGCCACTGCCGGCCATGGCTGCACTAACATgtaagcttcc ... attggtttagGTATTGGGCGGAGCACACGAATCAATGGCCATCTTTCT
EST: gi|208392100|gb|DC949546.1|DC949546
EST:     TTGAGGAAGAACACCCCCGCAGCCACTGCCGGCCATGGCTGCACTAACAT                         GTATTGGGCGGAGCACACGAATCAATGGCCATCTTTCTTCAACATCAACAC
genomic: TTGAGGAAGAACACCCCCGCAGCCACTGCCGGCCATGGCTGCACTAACATgtaagcttcc ... attggtttagGTATTGGGCGGAGCACACGAATCAATGGCCATCTTTCTTCAACATCAACAC
EST: gi|208395756|gb|DC920290.1|DC920290
EST:     TTGAGGAAGAACACCCCCGCAGCCACTGCCGGCCATGGCTGCACTAACAT                         GTATTGGGCGGAGCACACGAATCAATGGCCATCTTTCTTCAACATCAACAC
genomic: TTGAGGAAGAACACCCCCGCAGCCACTGCCGGCCATGGCTGCACTAACATgtaagcttcc ... attggtttagGTATTGGGCGGAGCACACGAATCAATGGCCATCTTTCTTCAACATCAACAC
EST: gi|208351998|gb|DC925807.1|DC925807
EST:     TTGAGGAAGAACACCCCCGCAGCCACTGCCGGCCATGGCTGCACTAACAT                         GTATTGGGCGGAGCACGCGAATCAATGGCCATCTTTCTTCAACATCAACAC
genomic: TTGAGGAAGAACACCCCCGCAGCCACTGCCGGCCATGGCTGCACTAACATgtaagcttcc ... attggtttagGTATTGGGCGGAGCACACGAATCAATGGCCATCTTTCTTCAACATCAACAC
EST: gi|208353388|gb|DC922484.1|DC922484
EST:     TTGAGGAAGAACACCCCCGCAGCCACTGCCGGCCATGGCTGCACTAACAT                         GTATTGGGCGGAGCACACGAATCAATGGCCATCTTTCTTCAACATCAACAC
genomic: TTGAGGAAGAACACCCCCGCAGCCACTGCCGGCCATGGCTGCACTAACATgtaagcttcc ... attggtttagGTATTGGGCGGAGCACACGAATCAATGGCCATCTTTCTTCAACATCAACAC
EST: gi|67726359|gb|BJ976618.1|BJ976618
EST:     TTGAGGNAGAACANCCCCGCAGCCACTGCCGGCCATGGCTGCACTAACAT                         GTATTGGGCGGAGCACACGAATCAATGGCCATCTTTCTTCAACATCAACAC
genomic: TTGAGGAAGAACACCCCCGCAGCCACTGCCGGCCATGGCTGCACTAACATgtaagcttcc ... attggtttagGTATTGGGCGGAGCACACGAATCAATGGCCATCTTTCTTCAACATCAACAC
EST: gi|67726216|gb|BJ976475.1|BJ976475
EST:     TTGAGGAAGAACACCCCCGCAGCCACTGCCGGCCATGGCTGCACTAACAT                         GTATTGGGCGGAGCACACGAATCAATGGCCATCTTTCTTCAACATCAACAC
genomic: TTGAGGAAGAACACCCCCGCAGCCACTGCCGGCCATGGCTGCACTAACATgtaagcttcc ... attggtttagGTATTGGGCGGAGCACACGAATCAATGGCCATCTTTCTTCAACATCAACAC
EST: gi|208397508|gb|DC916392.1|DC916392
EST:     TTGAGGAAGAACACCCCCGCAGCCACTGCCGGCCATGGCTGCACTAACAT                         GTATTGGGCGGAGCACACGAATCAATGGCCATCTTTCTTCAACATCAACAC
genomic: TTGAGGAAGAACACCCCCGCAGCCACTGCCGGCCATGGCTGCACTAACATgtaagcttcc ... attggtttagGTATTGGGCGGAGCACACGAATCAATGGCCATCTTTCTTCAACATCAACAC
EST: gi|208378782|gb|DC918930.1|DC918930
EST:     TTGAGGAAGAACACCCCCGCAGCCACTGCCGGCCATGGCTGCACTAACAT                         GTATTGGGCGGAGCACACGAATCAATGGCCATCTTTCTTCAACATCAACAC
genomic: TTGAGGAAGAACACCCCCGCAGCCACTGCCGGCCATGGCTGCACTAACATgtaagcttcc ... attggtttagGTATTGGGCGGAGCACACGAATCAATGGCCATCTTTCTTCAACATCAACAC
EST: gi|67725717|gb|BJ975976.1|BJ975976
EST:     TTGAGGAAGAACACCCCCGCAGCCACTGCCGGCCATGGCTGCACTAACAT                         GTATTGGGCGGAGCACACGAATCAATGGCCATCTTTCTTCAACATCAACAC
genomic: TTGAGGAAGAACACCCCCGCAGCCACTGCCGGCCATGGCTGCACTAACATgtaagcttcc ... attggtttagGTATTGGGCGGAGCACACGAATCAATGGCCATCTTTCTTCAACATCAACAC
EST: gi|208397429|gb|DC916355.1|DC916355
EST:     TTGAGGAAGAACACCCCCGCAGCCACTGCCGGCCATGGCTGCACTAACAT                         GTATTGGGCGGAGCACACGAATCAATGGCCATCTTTCTTCAACATCAACAC
genomic: TTGAGGAAGAACACCCCCGCAGCCACTGCCGGCCATGGCTGCACTAACATgtaagcttcc ... attggtttagGTATTGGGCGGAGCACACGAATCAATGGCCATCTTTCTTCAACATCAACAC
EST: gi|67727094|gb|BJ977353.1|BJ977353
EST:     TTGAGGAAGAACACCCCCGCAGCCACTGCCGGCCATGGCTGCACTAACAT                         GTATTGGGCGGAGCACACGAATCAATGGCCATCTTTCTTCAACATCAACAC
genomic: TTGAGGAAGAACACCCCCGCAGCCACTGCCGGCCATGGCTGCACTAACATgtaagcttcc ... attggtttagGTATTGGGCGGAGCACACGAATCAATGGCCATCTTTCTTCAACATCAACAC
EST: gi|67726913|gb|BJ977172.1|BJ977172
EST:     TTGAGGAAGAACACCCCCGCAGCCACTGCCGGCCATGGCTGCACTAACAT                         GTATTGGGCGGAGCACACGAATCAATGGCCATCTTTCTTCAACATCAACAC
genomic: TTGAGGAAGAACACCCCCGCAGCCACTGCCGGCCATGGCTGCACTAACATgtaagcttcc ... attggtttagGTATTGGGCGGAGCACACGAATCAATGGCCATCTTTCTTCAACATCAACAC
EST: gi|37824744|gb|BJ582810.1|BJ582810
EST:     TGCCGGCCATGGCTGCACTAACAT                         GTATTGGGCGGAGCACACGAATCAATGGCCATCTTTCTTCAACATCAACAC
genomic: TGCCGGCCATGGCTGCACTAACATgtaagcttcc ... attggtttagGTATTGGGCGGAGCACACGAATCAATGGCCATCTTTCTTCAACATCAACAC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gcatgtaagatgacattctctcgtagggttttcatttccaatggtattggtttagGTATTGGGCGGAGCACACGAATCAATGGCCATCTTTCTTCAACATCAACACGCAAGTAGCGCAGGCATTTGGAACCAAGGCCGGGGAAGTCTATGGCACC
                            ttttcattt  TA-rich tract