1 5' 3' | 2 5' 3' | 3 5' 3' |
CTTTGTTGCGGGAGACGTTGAAGGTAGAGGCTTTGAAGGATCAAACCCGGAGAGAATCTTTGAAATCTCGTCATAGGCGTTTGAGGAAGAAGgtaatgtggaatccctcgtgtagcttcccattctactcaatgtgaaattgtagagcctcctcagtgcgtctatgtacatacccaattttttgttttcaga...
species | Physcomitrella patens |
transcript | PP1S97_12V6.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: AAACCCGGAGAGAATCTTTGAAATCTCGTCATAGGCGTTTGAGGAAGAAG CTGAGTGGCACCACGGAGAGGCCTCGATTGGCTGTCTTCCGCACGAATCAAEST: gi|18361696|gb|BJ193763.1|BJ193763
genomic: AAACCCGGAGAGAATCTTTGAAATCTCGTCATAGGCGTTTGAGGAAGAAGgtaatgtgga ... ttctgtgcagCTGAGTGGCACCACGGAGAGGCCTCGATTGGCTGTCTTCCGCACGAATCAA
EST: AAACCCGGAGAGAATCTTTGAAATCTCGTCATAGGCGTTTGAGGAAGAAG CTGAGTGGCACCACGGAGAGGCCTCGATTGGCTGTCTTCCGCACGAATCAAEST: gi|208377631|gb|DC932167.1|DC932167
genomic: AAACCCGGAGAGAATCTTTGAAATCTCGTCATAGGCGTTTGAGGAAGAAGgtaatgtgga ... ttctgtgcagCTGAGTGGCACCACGGAGAGGCCTCGATTGGCTGTCTTCCGCACGAATCAA
EST: AAACCCGGAGAGAATCTTTGAAATCTCGTCATAGGCGTTTGAGGAAGAAG CTGAGTGGCACCACGGAGAGGCCTCGATTGGCTGTCTTCCGCACGAATCAAEST: gi|37841451|gb|BJ599459.1|BJ599459
genomic: AAACCCGGAGAGAATCTTTGAAATCTCGTCATAGGCGTTTGAGGAAGAAGgtaatgtgga ... ttctgtgcagCTGAGTGGCACCACGGAGAGGCCTCGATTGGCTGTCTTCCGCACGAATCAA
EST: AACCCGGAGATGAATCTTTGAAATCTCGTCATAGGCGTTTGAGGAAGAAG CTGAGAGGCACCACGGAGAGGCCTCGATTGGCTGTCTTCCGCACGAATCAAEST: gi|162237052|gb|FC413211.1|FC413211
genomic: AACCCGGAGA-GAATCTTTGAAATCTCGTCATAGGCGTTTGAGGAAGAAGgtaatgtgga ... ttctgtgcagCTGAGTGGCACCACGGAGAGGCCTCGATTGGCTGTCTTCCGCACGAATCAA
EST: AAACCCGGAGAGAATCTTTGAAATCTCGTCATAGGCGTTTGAGGAAGAAG CTGAGTGGCACCACGGAGAGGCCTCGATTGGCTGTCTTCCGCACGAATCAAEST: gi|162272082|gb|FC447876.1|FC447876
genomic: AAACCCGGAGAGAATCTTTGAAATCTCGTCATAGGCGTTTGAGGAAGAAGgtaatgtgga ... ttctgtgcagCTGAGTGGCACCACGGAGAGGCCTCGATTGGCTGTCTTCCGCACGAATCAA
EST: AAACCCGGAGAGAATCTTTGAAATCTCGTCATAGGCGTTTGAGGAAGAAG CTGAGTGGCACCACGGAGAGGCCTCGATTGGCTGTCTTCCGCACGAATCAAEST: gi|162271630|gb|FC447515.1|FC447515
genomic: AAACCCGGAGAGAATCTTTGAAATCTCGTCATAGGCGTTTGAGGAAGAAGgtaatgtgga ... ttctgtgcagCTGAGTGGCACCACGGAGAGGCCTCGATTGGCTGTCTTCCGCACGAATCAA
EST: AAACCCGGAGAGAATCTTTGAAATCTCGTCATAGGCGTTTGAGGAAGAAG CTGAGTGGCACCACGGAGAGGCCTCGATTGGCTGTCTTCCGCACGAATCAAEST: gi|67574202|gb|BJ947026.1|BJ947026
genomic: AAACCCGGAGAGAATCTTTGAAATCTCGTCATAGGCGTTTGAGGAAGAAGgtaatgtgga ... ttctgtgcagCTGAGTGGCACCACGGAGAGGCCTCGATTGGCTGTCTTCCGCACGAATCAA
EST: AAACCCGGAGAGAATCTTTGAAATCTCGTCATAGGCGTTTGAGGAAGAAG CTGAGTGGCACCACGGAGAGGCCTCGATTGGCTGTCTTCCGCACGAATCAAEST: gi|208361024|gb|DC946671.1|DC946671
genomic: AAACCCGGAGAGAATCTTTGAAATCTCGTCATAGGCGTTTGAGGAAGAAGgtaatgtgga ... ttctgtgcagCTGAGTGGCACCACGGAGAGGCCTCGATTGGCTGTCTTCCGCACGAATCAA
EST: AAACCCGGAGAGAATCTTTGAAATCTCGTCATAGGCGTTTGAGGAAGAAG CTGAGTGGCACCACGGAGAGGCCTCGATTGGCTGTCTTCCGCACGAATCAAEST: gi|67578839|gb|BJ951006.1|BJ951006
genomic: AAACCCGGAGAGAATCTTTGAAATCTCGTCATAGGCGTTTGAGGAAGAAGgtaatgtgga ... ttctgtgcagCTGAGTGGCACCACGGAGAGGCCTCGATTGGCTGTCTTCCGCACGAATCAA
EST: AAACCCGGAGAGAATCTTTGAAATCTCGTCATAGGCGTTTGAGGAAGAAG CTGAGTGGCACCACGGAGAGGCCTCGATTGGCTGTCTTCCGCACGAATCAAEST: gi|162225027|gb|FC401443.1|FC401443
genomic: AAACCCGGAGAGAATCTTTGAAATCTCGTCATAGGCGTTTGAGGAAGAAGgtaatgtgga ... ttctgtgcagCTGAGTGGCACCACGGAGAGGCCTCGATTGGCTGTCTTCCGCACGAATCAA
EST: AAACCCGGAGAGAATCTTTGAAATCTCGTCATAGGCGTTTGAGGAAGAAG CTGAGTGGCACCACGGAGAGGCCTCGATTGGCTGTCTTCCGCACGAATCAAEST: gi|18363385|gb|BJ195457.1|BJ195457
genomic: AAACCCGGAGAGAATCTTTGAAATCTCGTCATAGGCGTTTGAGGAAGAAGgtaatgtgga ... ttctgtgcagCTGAGTGGCACCACGGAGAGGCCTCGATTGGCTGTCTTCCGCACGAATCAA
EST: AAACCCGGAGAGAATCTTTGAAATCTCGTCATAGGCGTTTGAGGAAGAAG CTGAGTGGCACCACGGAGAGGCCTCGATTGGCTGTCTTCCGCACGAATCAAEST: gi|37845987|gb|BJ603995.1|BJ603995
genomic: AAACCCGGAGAGAATCTTTGAAATCTCGTCATAGGCGTTTGAGGAAGAAGgtaatgtgga ... ttctgtgcagCTGAGTGGCACCACGGAGAGGCCTCGATTGGCTGTCTTCCGCACGAATCAA
EST: AAACCCGGAGAGAATCTTTGAAATCTCGTCATAGGCGTTTGAGGAAGAAG CTGAGTGGCACCACGGAGAGGCCTCGATTGGCTGTCTTCCGCACGAATCAAEST: gi|67507573|gb|BJ940454.1|BJ940454
genomic: AAACCCGGAGAGAATCTTTGAAATCTCGTCATAGGCGTTTGAGGAAGAAGgtaatgtgga ... ttctgtgcagCTGAGTGGCACCACGGAGAGGCCTCGATTGGCTGTCTTCCGCACGAATCAA
EST: AAACCCGGAGAGAATCTTTGAAATCTCGTCATAGGCGTTTGAGGAAGAAG CTGAGTGGCACCACGGAGAGGCCTCGATTGGCTGTCTTCCGCACGAATCAAEST: gi|67697007|gb|BJ957240.1|BJ957240
genomic: AAACCCGGAGAGAATCTTTGAAATCTCGTCATAGGCGTTTGAGGAAGAAGgtaatgtgga ... ttctgtgcagCTGAGTGGCACCACGGAGAGGCCTCGATTGGCTGTCTTCCGCACGAATCAA
EST: AAACCCGGAGAGAATCTTTGAAATCTCGTCATAGGCGTTTGAGGAAGAAG CTGAGTGGCACCACGGAGAGGCCTCGATTGGCTGTCTTCCGCACGAATCAAEST: gi|67693764|gb|BJ953997.1|BJ953997
genomic: AAACCCGGAGAGAATCTTTGAAATCTCGTCATAGGCGTTTGAGGAAGAAGgtaatgtgga ... ttctgtgcagCTGAGTGGCACCACGGAGAGGCCTCGATTGGCTGTCTTCCGCACGAATCAA
EST: AAACCCGGAGAGAATCTTTGAAATCTCGTCATAGGCGTTTGAGGAAGAAG CTGAGTGGCACCACGGAGAGGCCTCGATTGGCTGTCTTCCGCACGAATCAAEST: gi|208395976|gb|DC915736.1|DC915736
genomic: AAACCCGGAGAGAATCTTTGAAATCTCGTCATAGGCGTTTGAGGAAGAAGgtaatgtgga ... ttctgtgcagCTGAGTGGCACCACGGAGAGGCCTCGATTGGCTGTCTTCCGCACGAATCAA
EST: AAACCCGGAGAGAATCTTTGAAATCTCGTCATAGGCGTTTGAGGAAGAAG CTGAGTGGCACCACGGAGAGGCCTCGATTGGCTGTCTTCCGCACGAATCAAEST: gi|162234108|gb|FC410543.1|FC410543
genomic: AAACCCGGAGAGAATCTTTGAAATCTCGTCATAGGCGTTTGAGGAAGAAGgtaatgtgga ... ttctgtgcagCTGAGTGGCACCACGGAGAGGCCTCGATTGGCTGTCTTCCGCACGAATCAA
EST: AAACCCGGAGAGAATCTTTGAAATCTCGTCATAGGCGTTTGAGGAAGAAG CTGAGTGGCACCACGGAGAGGCCTCGATTGGCTGTCTTCCGCACGAATCAAEST: gi|162234312|gb|FC410058.1|FC410058
genomic: AAACCCGGAGAGAATCTTTGAAATCTCGTCATAGGCGTTTGAGGAAGAAGgtaatgtgga ... ttctgtgcagCTGAGTGGCACCACGGAGAGGCCTCGATTGGCTGTCTTCCGCACGAATCAA
EST: AAACCCGGAGAGAATCTTTGAAATCTCGTCATAGGCGTTTGAGGAAGAAG CTGAGTGGCACCACGGAGAGGCCTCGATTGGCTGTCTTCCGCACGAGTCAAEST: gi|162206486|gb|FC382855.1|FC382855
genomic: AAACCCGGAGAGAATCTTTGAAATCTCGTCATAGGCGTTTGAGGAAGAAGgtaatgtgga ... ttctgtgcagCTGAGTGGCACCACGGAGAGGCCTCGATTGGCTGTCTTCCGCACGAATCAA
EST: AAACCCGGAGAGAATCTTTGAAATCTCGTCATAGGCGTTTGAGGAAGAAG CTGAGTGGCACCACGGAGAGGCCTCGATTGGCTGTCTTCCGCACGAATCAAEST: gi|162247010|gb|FC423952.1|FC423952
genomic: AAACCCGGAGAGAATCTTTGAAATCTCGTCATAGGCGTTTGAGGAAGAAGgtaatgtgga ... ttctgtgcagCTGAGTGGCACCACGGAGAGGCCTCGATTGGCTGTCTTCCGCACGAATCAA
EST: AAACCCGGAGAGAATCTTTGAAATCTCGTCATAGGCGTTTGAGGAAGAAG CTGAGTGGCACCACGGAGAGGCCTCGATTGGCTGTCTTCCGCACGAATCAAEST: gi|162225028|gb|FC401444.1|FC401444
genomic: AAACCCGGAGAGAATCTTTGAAATCTCGTCATAGGCGTTTGAGGAAGAAGgtaatgtgga ... ttctgtgcagCTGAGTGGCACCACGGAGAGGCCTCGATTGGCTGTCTTCCGCACGAATCAA
EST: AAACCCGGAGAGAATCTTTGAAATCTCGTCATAGGCGTTTGAGGAAGAAG CTGAGTGGCACCACGGAGAGGCCTCGATTGGCTGTCTTCCGCACGAATCAAEST: gi|37839389|gb|BJ597397.1|BJ597397
genomic: AAACCCGGAGAGAATCTTTGAAATCTCGTCATAGGCGTTTGAGGAAGAAGgtaatgtgga ... ttctgtgcagCTGAGTGGCACCACGGAGAGGCCTCGATTGGCTGTCTTCCGCACGAATCAA
EST: AAACCCGGAGAGAATCTTTGAAATCTCGTCATAGGCGTTTGAGGAAGAAG CTGAGTGGCACCACGGAGAGGCCTCGATTGGCTGTCTTCCGCACGAATCAAEST: gi|67570482|gb|BJ943306.1|BJ943306
genomic: AAACCCGGAGAGAATCTTTGAAATCTCGTCATAGGCGTTTGAGGAAGAAGgtaatgtgga ... ttctgtgcagCTGAGTGGCACCACGGAGAGGCCTCGATTGGCTGTCTTCCGCACGAATCAA
EST: AAACCCGGAGAGAATCTTTGAAATCTCGTCATAGGCGTTTGAGGAAGAAG CTGAGTGGCACCACGGAGAGGCCTCGATTGGCTGTCTTCCGCACGAATCAAEST: gi|162268056|gb|FC443526.1|FC443526
genomic: AAACCCGGAGAGAATCTTTGAAATCTCGTCATAGGCGTTTGAGGAAGAAGgtaatgtgga ... ttctgtgcagCTGAGTGGCACCACGGAGAGGCCTCGATTGGCTGTCTTCCGCACGAATCAA
EST: AAACCCGGAGAGAATCTTTGAAATCTCGTCATAGGCGTTTGAGGAAGAAG CTGAGTGGCACCACGGAGAGGCCTCGATTGGCTGTCTTCCGCACGAATCAAEST: gi|67697603|gb|BJ957836.1|BJ957836
genomic: AAACCCGGAGAGAATCTTTGAAATCTCGTCATAGGCGTTTGAGGAAGAAGgtaatgtgga ... ttctgtgcagCTGAGTGGCACCACGGAGAGGCCTCGATTGGCTGTCTTCCGCACGAATCAA
EST: AAACCCGGAGAGAATCTTTGAAATCTCGTCATAGGCGTTTGAGGAAGAAG CTGAGTGGCACCACGGAGAGGCCTCGATTGGCTGTCTTCCGCACGAATCAAEST: gi|162234311|gb|FC410057.1|FC410057
genomic: AAACCCGGAGAGAATCTTTGAAATCTCGTCATAGGCGTTTGAGGAAGAAGgtaatgtgga ... ttctgtgcagCTGAGTGGCACCACGGAGAGGCCTCGATTGGCTGTCTTCCGCACGAATCAA
EST: AAACCCGGAGAGAATCTTTGAAATCTCGTCATAGGCGTTTGAGGAAGAAG CTGAGTGGCACCACGGAGAGGCCTCGATTGGCTGTCTTCCGCACGAGTCAA
genomic: AAACCCGGAGAGAATCTTTGAAATCTCGTCATAGGCGTTTGAGGAAGAAGgtaatgtgga ... ttctgtgcagCTGAGTGGCACCACGGAGAGGCCTCGATTGGCTGTCTTCCGCACGAATCAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTTTGTTGCGGGAGACGTTGAAGGTAGAGGCTTTGAAGGATCAAACCCGGAGAGAATCTTTGAAATCTCGTCATAGGCGTTTGAGGAAGAAGgtaatgtggaatccctcgtgtagcttcccattctactcaatgtgaaattgtagagcctcctcagtgcgtctatgtacatacccaattttttgttttcaga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG